miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 1228 0.66 0.607971
Target:  5'- uCUGgcgggCGCUGcgcggcgcucagcACGCGaaaACGUCGCAuaGCUa -3'
miRNA:   3'- -GACa----GCGAU-------------UGCGCg--UGCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 3478 0.66 0.653733
Target:  5'- cCUGgcgCGCUGAUGaucgaGCACGaCGuCGGCa -3'
miRNA:   3'- -GACa--GCGAUUGCg----CGUGCaGC-GUCGg -5'
28163 5' -55.4 NC_005887.1 + 26922 0.66 0.631409
Target:  5'- -aGUCGCUGGC-CGC-CGUCGaCgaacccugcuGGCCc -3'
miRNA:   3'- gaCAGCGAUUGcGCGuGCAGC-G----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 2683 0.66 0.642576
Target:  5'- cCUGgugCGCgugaaGCGUACGggcggcaaGCGGCCg -3'
miRNA:   3'- -GACa--GCGauug-CGCGUGCag------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 5578 0.66 0.653733
Target:  5'- -cGaCGCUGACcuGCGCcaguuCGUCGaGGCCa -3'
miRNA:   3'- gaCaGCGAUUG--CGCGu----GCAGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28571 0.66 0.631409
Target:  5'- -cGUCGCcgccCGCuGCGCGgaCGCGGUCg -3'
miRNA:   3'- gaCAGCGauu-GCG-CGUGCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 35315 0.66 0.642576
Target:  5'- uCUGcaUCGCUccacuGC-CGCGCGcCGCGGCg -3'
miRNA:   3'- -GAC--AGCGAu----UGcGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 11717 0.66 0.609086
Target:  5'- --aUCGCUucgccGCGCGCACGgCGC-GCa -3'
miRNA:   3'- gacAGCGAu----UGCGCGUGCaGCGuCGg -5'
28163 5' -55.4 NC_005887.1 + 33947 0.66 0.620242
Target:  5'- -cGgCGCUcGGCGaGCACGUCGCGuGCg -3'
miRNA:   3'- gaCaGCGA-UUGCgCGUGCAGCGU-CGg -5'
28163 5' -55.4 NC_005887.1 + 31533 0.66 0.642576
Target:  5'- uUGUCGCUucgccauuGAcCGCGUuuccguagGCG-CGCAGUCg -3'
miRNA:   3'- gACAGCGA--------UU-GCGCG--------UGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 42186 0.66 0.653733
Target:  5'- --uUCGC--GCGCGCuggcuCGUCGCAuuGCUg -3'
miRNA:   3'- gacAGCGauUGCGCGu----GCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 11367 0.66 0.653733
Target:  5'- cCUGaUC---AGCGCGgGCGUCagcGCAGCCg -3'
miRNA:   3'- -GAC-AGcgaUUGCGCgUGCAG---CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 2326 0.66 0.635876
Target:  5'- -gGUCGCUGGCaucuauggcgauccgGCGgGCGaccagcgcUCGCAGgCCg -3'
miRNA:   3'- gaCAGCGAUUG---------------CGCgUGC--------AGCGUC-GG- -5'
28163 5' -55.4 NC_005887.1 + 36069 0.66 0.647041
Target:  5'- --cUCGCgcACGCcgucgauguacagcuGCACGUagGCGGCCa -3'
miRNA:   3'- gacAGCGauUGCG---------------CGUGCAg-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 7306 0.66 0.620242
Target:  5'- -cGUCGUgu-CGcCGUcCGUCGCcGCCg -3'
miRNA:   3'- gaCAGCGauuGC-GCGuGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 32670 0.66 0.642576
Target:  5'- gUGUCGC--GCGUGCGCGcuUCgGCAaCCg -3'
miRNA:   3'- gACAGCGauUGCGCGUGC--AG-CGUcGG- -5'
28163 5' -55.4 NC_005887.1 + 36994 0.66 0.620242
Target:  5'- --cUCGCcGGCGaGCACG-CGCAGgCCg -3'
miRNA:   3'- gacAGCGaUUGCgCGUGCaGCGUC-GG- -5'
28163 5' -55.4 NC_005887.1 + 42086 0.66 0.653733
Target:  5'- gCUGUCGCguggGGCGCG-AUGcCGC-GUCg -3'
miRNA:   3'- -GACAGCGa---UUGCGCgUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 811 0.66 0.635876
Target:  5'- --aUCGCgaucaacagccauGCuCGCGCGaUCGCGGCCg -3'
miRNA:   3'- gacAGCGau-----------UGcGCGUGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 22614 0.66 0.620242
Target:  5'- --aUCGCU---GCGCGCGUCGCcuacuGGCa -3'
miRNA:   3'- gacAGCGAuugCGCGUGCAGCG-----UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.