miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 28395 0.96 0.006844
Target:  5'- gCUGUCGaucACGCGCACGUCGCAGCCg -3'
miRNA:   3'- -GACAGCgauUGCGCGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 7440 0.78 0.118949
Target:  5'- uUGgCGCUGGCGUGCGCGUCGUgaucGGCa -3'
miRNA:   3'- gACaGCGAUUGCGCGUGCAGCG----UCGg -5'
28163 5' -55.4 NC_005887.1 + 23396 0.77 0.153319
Target:  5'- gCUGcCGCUGGCagccugcagcaGCGCGucgaucagcuCGUCGCAGCCg -3'
miRNA:   3'- -GACaGCGAUUG-----------CGCGU----------GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13157 0.75 0.207386
Target:  5'- -cGUCGCUugcCGCGCGCG-CGCAGaCa -3'
miRNA:   3'- gaCAGCGAuu-GCGCGUGCaGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 15991 0.75 0.213045
Target:  5'- aUGUCGUgcGCGCGCAgaccCGcCGCgAGCCg -3'
miRNA:   3'- gACAGCGauUGCGCGU----GCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 32755 0.75 0.213045
Target:  5'- gUGcgCGCcGGCGCGCGCcaUGCAGCCg -3'
miRNA:   3'- gACa-GCGaUUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14896 0.74 0.23082
Target:  5'- ---cCGCgAACGUGCccgccaucaGCGUCGCGGCCg -3'
miRNA:   3'- gacaGCGaUUGCGCG---------UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 24203 0.74 0.249829
Target:  5'- gUGUUGCcGACGUGCGUGUUGCcaAGCCg -3'
miRNA:   3'- gACAGCGaUUGCGCGUGCAGCG--UCGG- -5'
28163 5' -55.4 NC_005887.1 + 22832 0.73 0.256447
Target:  5'- -cGUCGagccAACGaGCACGUUGUAGCCg -3'
miRNA:   3'- gaCAGCga--UUGCgCGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40589 0.73 0.270112
Target:  5'- -cGUCGCUGccGCGCGcCGCGUgGUggauGCCg -3'
miRNA:   3'- gaCAGCGAU--UGCGC-GUGCAgCGu---CGG- -5'
28163 5' -55.4 NC_005887.1 + 26419 0.73 0.270112
Target:  5'- gCUGgcggccgCGCgggAACGCGCGC--UGCAGCCg -3'
miRNA:   3'- -GACa------GCGa--UUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 35665 0.72 0.291701
Target:  5'- gCUGUCGacaUAcaGCaGCGCGCGaUCGgCGGCCg -3'
miRNA:   3'- -GACAGCg--AU--UG-CGCGUGC-AGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 18409 0.72 0.291701
Target:  5'- -aGUCGCccgAACGuCGCAUGUCGCcgaugcGCCc -3'
miRNA:   3'- gaCAGCGa--UUGC-GCGUGCAGCGu-----CGG- -5'
28163 5' -55.4 NC_005887.1 + 5963 0.72 0.299191
Target:  5'- --cUCGCUGGCGCGUccgGCGaUGCAGCa -3'
miRNA:   3'- gacAGCGAUUGCGCG---UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 13725 0.72 0.30683
Target:  5'- -cGcCGCUGAuCGCguucuGCACGUCGguGCUg -3'
miRNA:   3'- gaCaGCGAUU-GCG-----CGUGCAGCguCGG- -5'
28163 5' -55.4 NC_005887.1 + 29680 0.72 0.313831
Target:  5'- ----aGCUGGCGCuugcuuggcagcuGCACG-CGCAGCCa -3'
miRNA:   3'- gacagCGAUUGCG-------------CGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14453 0.72 0.314616
Target:  5'- -gGUCGUacGCGCGCGCGccgaGCGGCg -3'
miRNA:   3'- gaCAGCGauUGCGCGUGCag--CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 15393 0.72 0.322551
Target:  5'- -cG-CGCUGAuCGCGCGCGg-GCAGCg -3'
miRNA:   3'- gaCaGCGAUU-GCGCGUGCagCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 25535 0.72 0.330635
Target:  5'- -cGUCGCcgccgAGCgGUGCGCGuUCGUAGCUg -3'
miRNA:   3'- gaCAGCGa----UUG-CGCGUGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28475 0.71 0.346402
Target:  5'- cCUGcgcgCGCUcggcugcGACGUGCGCGUgaCGaCAGCCg -3'
miRNA:   3'- -GACa---GCGA-------UUGCGCGUGCA--GC-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.