miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 379 0.68 0.542898
Target:  5'- --cUCGgUGuACGCGCGCacCGCGGCCu -3'
miRNA:   3'- gacAGCgAU-UGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 704 0.66 0.642576
Target:  5'- -cGUgCGCUcgcCGCGCGCuuucaUCGCGGCUu -3'
miRNA:   3'- gaCA-GCGAuu-GCGCGUGc----AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 811 0.66 0.635876
Target:  5'- --aUCGCgaucaacagccauGCuCGCGCGaUCGCGGCCg -3'
miRNA:   3'- gacAGCGau-----------UGcGCGUGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1069 0.69 0.468987
Target:  5'- gUGUacaGC--GCGCGCACG--GCGGCCg -3'
miRNA:   3'- gACAg--CGauUGCGCGUGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1211 0.68 0.542898
Target:  5'- -cGUCagaucCUucACGCGCACG-CGCGGCUu -3'
miRNA:   3'- gaCAGc----GAu-UGCGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1228 0.66 0.607971
Target:  5'- uCUGgcgggCGCUGcgcggcgcucagcACGCGaaaACGUCGCAuaGCUa -3'
miRNA:   3'- -GACa----GCGAU-------------UGCGCg--UGCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 1487 0.66 0.664871
Target:  5'- -cGgCGUgcgGCGCucGCGCGgCGCGGCCg -3'
miRNA:   3'- gaCaGCGau-UGCG--CGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1890 0.67 0.569161
Target:  5'- gUGUCGCcgaaGAUGCcguaccaggucggcgGCACGUCcuucggguaGCGGCCg -3'
miRNA:   3'- gACAGCGa---UUGCG---------------CGUGCAG---------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 2326 0.66 0.635876
Target:  5'- -gGUCGCUGGCaucuauggcgauccgGCGgGCGaccagcgcUCGCAGgCCg -3'
miRNA:   3'- gaCAGCGAUUG---------------CGCgUGC--------AGCGUC-GG- -5'
28163 5' -55.4 NC_005887.1 + 2423 0.69 0.448812
Target:  5'- -cGUCGUcGGCcugcgaGCGCugGUCGCccGCCg -3'
miRNA:   3'- gaCAGCGaUUG------CGCGugCAGCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 2683 0.66 0.642576
Target:  5'- cCUGgugCGCgugaaGCGUACGggcggcaaGCGGCCg -3'
miRNA:   3'- -GACa--GCGauug-CGCGUGCag------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 2966 0.66 0.609086
Target:  5'- -cGUCGUUcgcggcggccGACGUGUcCGUCGUcGCCu -3'
miRNA:   3'- gaCAGCGA----------UUGCGCGuGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 3313 0.67 0.553797
Target:  5'- -aGUUGCgcaGCGCGaGCGgCGCGGUCg -3'
miRNA:   3'- gaCAGCGau-UGCGCgUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 3478 0.66 0.653733
Target:  5'- cCUGgcgCGCUGAUGaucgaGCACGaCGuCGGCa -3'
miRNA:   3'- -GACa--GCGAUUGCg----CGUGCaGC-GUCGg -5'
28163 5' -55.4 NC_005887.1 + 3828 0.69 0.45884
Target:  5'- -cGUCGagccaguacGACGCgaacuGCAUGUUGCGGCCg -3'
miRNA:   3'- gaCAGCga-------UUGCG-----CGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 4348 0.66 0.620242
Target:  5'- aUGUCGaccuCGCGCGCGaucaUCG-GGCCg -3'
miRNA:   3'- gACAGCgauuGCGCGUGC----AGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 4554 0.67 0.585736
Target:  5'- -cG-CGCgauGCGCGCGcCGUUcggcaccuucgcgGCAGCCg -3'
miRNA:   3'- gaCaGCGau-UGCGCGU-GCAG-------------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 4709 0.68 0.50009
Target:  5'- -cGUCGCUGAgauccuugauCGCGCcggcggccaccgGCGcCGCGGCg -3'
miRNA:   3'- gaCAGCGAUU----------GCGCG------------UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 4830 0.69 0.468987
Target:  5'- -cGUCaGCUuccCGCGCuCGUCGCAaaagcaccGCCg -3'
miRNA:   3'- gaCAG-CGAuu-GCGCGuGCAGCGU--------CGG- -5'
28163 5' -55.4 NC_005887.1 + 5578 0.66 0.653733
Target:  5'- -cGaCGCUGACcuGCGCcaguuCGUCGaGGCCa -3'
miRNA:   3'- gaCaGCGAUUG--CGCGu----GCAGCgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.