miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 42186 0.66 0.653733
Target:  5'- --uUCGC--GCGCGCuggcuCGUCGCAuuGCUg -3'
miRNA:   3'- gacAGCGauUGCGCGu----GCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 42086 0.66 0.653733
Target:  5'- gCUGUCGCguggGGCGCG-AUGcCGC-GUCg -3'
miRNA:   3'- -GACAGCGa---UUGCGCgUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 41956 0.69 0.479248
Target:  5'- gUGcUCGCgugguGCGUGCGCGgcgCGCucGCCu -3'
miRNA:   3'- gAC-AGCGau---UGCGCGUGCa--GCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 41544 0.7 0.419475
Target:  5'- -aGgCGCUcGGCGCGCACG-CGaaguCAGCCa -3'
miRNA:   3'- gaCaGCGA-UUGCGCGUGCaGC----GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 41278 0.66 0.664871
Target:  5'- -cGUCGacc-UGCGCACGggcgCGCugcuGCCg -3'
miRNA:   3'- gaCAGCgauuGCGCGUGCa---GCGu---CGG- -5'
28163 5' -55.4 NC_005887.1 + 41275 0.66 0.653733
Target:  5'- -gGUCacggGCacgacGACGCGCGgGUCggauGCAGCCa -3'
miRNA:   3'- gaCAG----CGa----UUGCGCGUgCAG----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40940 0.68 0.489617
Target:  5'- -cGUCGCguuucuucuucGACGCGCGCG--GCGGCUu -3'
miRNA:   3'- gaCAGCGa----------UUGCGCGUGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40868 0.71 0.364446
Target:  5'- -cGUCGa--GCG-GCGCGUCGCcGCCa -3'
miRNA:   3'- gaCAGCgauUGCgCGUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 40760 0.7 0.382226
Target:  5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3'
miRNA:   3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 40688 0.68 0.542898
Target:  5'- cCUGgCGC--GCGCGCACGgcuggcaGgAGCCg -3'
miRNA:   3'- -GACaGCGauUGCGCGUGCag-----CgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40589 0.73 0.270112
Target:  5'- -cGUCGCUGccGCGCGcCGCGUgGUggauGCCg -3'
miRNA:   3'- gaCAGCGAU--UGCGC-GUGCAgCGu---CGG- -5'
28163 5' -55.4 NC_005887.1 + 40271 0.69 0.438905
Target:  5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3'
miRNA:   3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5'
28163 5' -55.4 NC_005887.1 + 40227 0.66 0.642576
Target:  5'- -cGUCGCgcagcucacACGCggcgaGCGCGgcgCGCAGCg -3'
miRNA:   3'- gaCAGCGau-------UGCG-----CGUGCa--GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 40013 0.68 0.532071
Target:  5'- -cGUCGCggugcgcaucaUGGCGCgGCuCGagGCGGCCg -3'
miRNA:   3'- gaCAGCG-----------AUUGCG-CGuGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 39992 0.68 0.489617
Target:  5'- -cGUCGUcGACGCGCcCGgcucgaucugCGCGGCa -3'
miRNA:   3'- gaCAGCGaUUGCGCGuGCa---------GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 38790 0.66 0.609086
Target:  5'- cCUGaUCGCgagGCGCaGCAC--CGUAGCCu -3'
miRNA:   3'- -GAC-AGCGau-UGCG-CGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 37775 0.67 0.586845
Target:  5'- -cGUCGUU-GCGCgGCAUGgaaaGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUGCG-CGUGCag--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 37397 0.68 0.489617
Target:  5'- ----aGCUGGCGCuGCGCGgUCGCGacuGCCu -3'
miRNA:   3'- gacagCGAUUGCG-CGUGC-AGCGU---CGG- -5'
28163 5' -55.4 NC_005887.1 + 37297 0.68 0.50009
Target:  5'- -cGUCGCgccaGACGguuucgauuCGguCGUCGCAGCa -3'
miRNA:   3'- gaCAGCGa---UUGC---------GCguGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 36994 0.66 0.620242
Target:  5'- --cUCGCcGGCGaGCACG-CGCAGgCCg -3'
miRNA:   3'- gacAGCGaUUGCgCGUGCaGCGUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.