miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 30285 0.7 0.39133
Target:  5'- --aUCGUgc-CGCGCACGacguUCGCAGUCa -3'
miRNA:   3'- gacAGCGauuGCGCGUGC----AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 25535 0.72 0.330635
Target:  5'- -cGUCGCcgccgAGCgGUGCGCGuUCGUAGCUg -3'
miRNA:   3'- gaCAGCGa----UUG-CGCGUGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 24935 0.71 0.347246
Target:  5'- uUGUCGaucgcGACGCGUGCG-CGCgGGCCg -3'
miRNA:   3'- gACAGCga---UUGCGCGUGCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 8082 0.71 0.373264
Target:  5'- -gGUCGUUcACgaaaGCGCGCG-CGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUG----CGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26833 0.71 0.373264
Target:  5'- -cGUgCGCgAGCGgGCGCGUCugccgGUAGCCg -3'
miRNA:   3'- gaCA-GCGaUUGCgCGUGCAG-----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30793 0.71 0.373264
Target:  5'- uCUGcgCGCgaucaaUGGCGCGCAC--CGCGGCCu -3'
miRNA:   3'- -GACa-GCG------AUUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40760 0.7 0.382226
Target:  5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3'
miRNA:   3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 8710 0.7 0.39133
Target:  5'- -cGcCGCggcgguaaGCGCuuCGUCGCGGCCa -3'
miRNA:   3'- gaCaGCGauug----CGCGu-GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 16509 0.7 0.39133
Target:  5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3'
miRNA:   3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 15393 0.72 0.322551
Target:  5'- -cG-CGCUGAuCGCGCGCGg-GCAGCg -3'
miRNA:   3'- gaCaGCGAUU-GCGCGUGCagCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 29680 0.72 0.313831
Target:  5'- ----aGCUGGCGCuugcuuggcagcuGCACG-CGCAGCCa -3'
miRNA:   3'- gacagCGAUUGCG-------------CGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 5963 0.72 0.299191
Target:  5'- --cUCGCUGGCGCGUccgGCGaUGCAGCa -3'
miRNA:   3'- gacAGCGAUUGCGCG---UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 7440 0.78 0.118949
Target:  5'- uUGgCGCUGGCGUGCGCGUCGUgaucGGCa -3'
miRNA:   3'- gACaGCGAUUGCGCGUGCAGCG----UCGg -5'
28163 5' -55.4 NC_005887.1 + 23396 0.77 0.153319
Target:  5'- gCUGcCGCUGGCagccugcagcaGCGCGucgaucagcuCGUCGCAGCCg -3'
miRNA:   3'- -GACaGCGAUUG-----------CGCGU----------GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13157 0.75 0.207386
Target:  5'- -cGUCGCUugcCGCGCGCG-CGCAGaCa -3'
miRNA:   3'- gaCAGCGAuu-GCGCGUGCaGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 15991 0.75 0.213045
Target:  5'- aUGUCGUgcGCGCGCAgaccCGcCGCgAGCCg -3'
miRNA:   3'- gACAGCGauUGCGCGU----GCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 32755 0.75 0.213045
Target:  5'- gUGcgCGCcGGCGCGCGCcaUGCAGCCg -3'
miRNA:   3'- gACa-GCGaUUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 24203 0.74 0.249829
Target:  5'- gUGUUGCcGACGUGCGUGUUGCcaAGCCg -3'
miRNA:   3'- gACAGCGaUUGCGCGUGCAGCG--UCGG- -5'
28163 5' -55.4 NC_005887.1 + 26419 0.73 0.270112
Target:  5'- gCUGgcggccgCGCgggAACGCGCGC--UGCAGCCg -3'
miRNA:   3'- -GACa------GCGa--UUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 35665 0.72 0.291701
Target:  5'- gCUGUCGacaUAcaGCaGCGCGCGaUCGgCGGCCg -3'
miRNA:   3'- -GACAGCg--AU--UG-CGCGUGC-AGC-GUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.