miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 18642 0.66 0.664871
Target:  5'- aCUGgaaCGCcgcGACGaGCAUGUCGCccgcgaAGCCg -3'
miRNA:   3'- -GACa--GCGa--UUGCgCGUGCAGCG------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 30344 0.67 0.586845
Target:  5'- -cGUCGU--GCGCgGCACGaucgUCGC-GCCg -3'
miRNA:   3'- gaCAGCGauUGCG-CGUGC----AGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 13499 0.67 0.575778
Target:  5'- -cGU-GCUGAgcggUGCGCcgcuCGUCGCAGCa -3'
miRNA:   3'- gaCAgCGAUU----GCGCGu---GCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 14896 0.74 0.23082
Target:  5'- ---cCGCgAACGUGCccgccaucaGCGUCGCGGCCg -3'
miRNA:   3'- gacaGCGaUUGCGCG---------UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27110 0.66 0.653733
Target:  5'- -aGUCggGCggcAGCGUGCGCGgUCGCGcgcucGCCg -3'
miRNA:   3'- gaCAG--CGa--UUGCGCGUGC-AGCGU-----CGG- -5'
28163 5' -55.4 NC_005887.1 + 40227 0.66 0.642576
Target:  5'- -cGUCGCgcagcucacACGCggcgaGCGCGgcgCGCAGCg -3'
miRNA:   3'- gaCAGCGau-------UGCG-----CGUGCa--GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 9062 0.66 0.642576
Target:  5'- -cGUCGU---CGCGCuuGUgCGCAGCa -3'
miRNA:   3'- gaCAGCGauuGCGCGugCA-GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 14495 0.66 0.631409
Target:  5'- --aUCGCgguUGCGCGCGUCGgGuCCg -3'
miRNA:   3'- gacAGCGauuGCGCGUGCAGCgUcGG- -5'
28163 5' -55.4 NC_005887.1 + 10013 0.66 0.620242
Target:  5'- -aGUCGUauuUGAaauCGCGCAgcUUGCGGCCg -3'
miRNA:   3'- gaCAGCG---AUU---GCGCGUgcAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 22608 0.67 0.586845
Target:  5'- aUGUCGau--CGCGgACGgcaugCGCAGCg -3'
miRNA:   3'- gACAGCgauuGCGCgUGCa----GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 38790 0.66 0.609086
Target:  5'- cCUGaUCGCgagGCGCaGCAC--CGUAGCCu -3'
miRNA:   3'- -GAC-AGCGau-UGCG-CGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 11521 0.66 0.620242
Target:  5'- uUGuUCGCgagcuGCGCGUugcgauccAUGaUCGCGGCCu -3'
miRNA:   3'- gAC-AGCGau---UGCGCG--------UGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 6461 0.66 0.653733
Target:  5'- uUGUCGaCUucCGCGUACGcuucgaGCAuGCCg -3'
miRNA:   3'- gACAGC-GAuuGCGCGUGCag----CGU-CGG- -5'
28163 5' -55.4 NC_005887.1 + 14690 0.67 0.59795
Target:  5'- gCUGcCGUgAGCGCGCccucgacgGCGcCGaCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGCGCG--------UGCaGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30828 0.66 0.653733
Target:  5'- --cUCGCc-GCGCGCACGgUCG-AGCUg -3'
miRNA:   3'- gacAGCGauUGCGCGUGC-AGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 4348 0.66 0.620242
Target:  5'- aUGUCGaccuCGCGCGCGaucaUCG-GGCCg -3'
miRNA:   3'- gACAGCgauuGCGCGUGC----AGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 32737 0.67 0.59795
Target:  5'- -gGUUGCcgaAGCGCGCACG-CGCGacaCCg -3'
miRNA:   3'- gaCAGCGa--UUGCGCGUGCaGCGUc--GG- -5'
28163 5' -55.4 NC_005887.1 + 4554 0.67 0.585736
Target:  5'- -cG-CGCgauGCGCGCGcCGUUcggcaccuucgcgGCAGCCg -3'
miRNA:   3'- gaCaGCGau-UGCGCGU-GCAG-------------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 41275 0.66 0.653733
Target:  5'- -gGUCacggGCacgacGACGCGCGgGUCggauGCAGCCa -3'
miRNA:   3'- gaCAG----CGa----UUGCGCGUgCAG----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 704 0.66 0.642576
Target:  5'- -cGUgCGCUcgcCGCGCGCuuucaUCGCGGCUu -3'
miRNA:   3'- gaCA-GCGAuu-GCGCGUGc----AGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.