Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28165 | 5' | -50.5 | NC_005887.1 | + | 29277 | 1.04 | 0.003795 |
Target: 5'- aAUACACCUAACACGGACGUACAGCAAc -3' miRNA: 3'- -UAUGUGGAUUGUGCCUGCAUGUCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 21328 | 0.74 | 0.388768 |
Target: 5'- --uCGCCUGAC-CGGACGUugAGCc- -3' miRNA: 3'- uauGUGGAUUGuGCCUGCAugUCGuu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 35369 | 0.74 | 0.418544 |
Target: 5'- -gGCACC--ACGCGGGCcUGCAGCAGc -3' miRNA: 3'- uaUGUGGauUGUGCCUGcAUGUCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 40683 | 0.73 | 0.439148 |
Target: 5'- cUGCACCUGGCGCGcGCGcACGGCu- -3' miRNA: 3'- uAUGUGGAUUGUGCcUGCaUGUCGuu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 15603 | 0.73 | 0.449664 |
Target: 5'- -gACGCagcGCACGGGCGUcgcGCAGCAGg -3' miRNA: 3'- uaUGUGgauUGUGCCUGCA---UGUCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 22241 | 0.72 | 0.482018 |
Target: 5'- uGUACGCCUcgaauuCACGGAgCGUGCAGUu- -3' miRNA: 3'- -UAUGUGGAuu----GUGCCU-GCAUGUCGuu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 33768 | 0.7 | 0.596586 |
Target: 5'- -aGCAUCUGGCGCGG-CGUGCcgGGCu- -3' miRNA: 3'- uaUGUGGAUUGUGCCuGCAUG--UCGuu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 39825 | 0.7 | 0.596586 |
Target: 5'- -aGCGCCUuGCGCa-GCGUGCGGCAGu -3' miRNA: 3'- uaUGUGGAuUGUGccUGCAUGUCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 12755 | 0.7 | 0.643926 |
Target: 5'- aGUACACCcGgaaguggcagcGCACGaaGACGUACGGCGGg -3' miRNA: 3'- -UAUGUGGaU-----------UGUGC--CUGCAUGUCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 11365 | 0.69 | 0.65576 |
Target: 5'- ---aGCCUGaucaGCGCGGGCGU-CAGCGc -3' miRNA: 3'- uaugUGGAU----UGUGCCUGCAuGUCGUu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 26489 | 0.69 | 0.66757 |
Target: 5'- gGUGCGCCUGcugcGCGCGGGCGUuucccucgaucGCGccgcGCAAg -3' miRNA: 3'- -UAUGUGGAU----UGUGCCUGCA-----------UGU----CGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 12233 | 0.69 | 0.66757 |
Target: 5'- uUGCAUau-GCACGGGCGUuCGGCGu -3' miRNA: 3'- uAUGUGgauUGUGCCUGCAuGUCGUu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 29486 | 0.69 | 0.68755 |
Target: 5'- -gGCACCUGcCACGGuCGUGCcuuccguguuggucAGCAGc -3' miRNA: 3'- uaUGUGGAUuGUGCCuGCAUG--------------UCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 8213 | 0.68 | 0.725764 |
Target: 5'- -cGCACCgacacGCGCGGGCuGUuCAGCAu -3' miRNA: 3'- uaUGUGGau---UGUGCCUG-CAuGUCGUu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 13105 | 0.68 | 0.737136 |
Target: 5'- -aACACCUAACACGaacggagaacGACGUGCAu--- -3' miRNA: 3'- uaUGUGGAUUGUGC----------CUGCAUGUcguu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 18107 | 0.68 | 0.737136 |
Target: 5'- -aAUACCUGACAcCGGACGcGCuGUAc -3' miRNA: 3'- uaUGUGGAUUGU-GCCUGCaUGuCGUu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 7839 | 0.68 | 0.748384 |
Target: 5'- cUGCgGCCUG--AUGGGCGUGCAGUAc -3' miRNA: 3'- uAUG-UGGAUugUGCCUGCAUGUCGUu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 31266 | 0.67 | 0.770457 |
Target: 5'- gAUGCGCC--ACGCGGAauCGUuugaGCAGCGg -3' miRNA: 3'- -UAUGUGGauUGUGCCU--GCA----UGUCGUu -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 14843 | 0.67 | 0.790816 |
Target: 5'- -gGCACgUu-CGCGGGCGUgcacaccGCAGCAAc -3' miRNA: 3'- uaUGUGgAuuGUGCCUGCA-------UGUCGUU- -5' |
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28165 | 5' | -50.5 | NC_005887.1 | + | 21390 | 0.67 | 0.812509 |
Target: 5'- -aGCGCC-AGCGCGGGa--ACAGCGAg -3' miRNA: 3'- uaUGUGGaUUGUGCCUgcaUGUCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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