Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 21390 | 0.67 | 0.812509 |
|
Target: 5'- -aGCGCC-AGCGCGGGa--ACAGCGAg -3' miRNA: 3'- uaUGUGGaUUGUGCCUgcaUGUCGUU- -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 24225 | 0.66 | 0.841794 |
|
Target: 5'- -cGCGCUUcGC-CGGuuGCGUACAGCGc -3' miRNA: 3'- uaUGUGGAuUGuGCC--UGCAUGUCGUu -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 25343 | 0.66 | 0.841794 |
|
Target: 5'- -aGCACCUugcucuGCGCGuGGCGgauCGGCAc -3' miRNA: 3'- uaUGUGGAu-----UGUGC-CUGCau-GUCGUu -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 2679 | 0.66 | 0.841794 |
|
Target: 5'- -aGCACCUGguGCGCGuGaaGCGUacggGCGGCAAg -3' miRNA: 3'- uaUGUGGAU--UGUGC-C--UGCA----UGUCGUU- -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 19168 | 0.66 | 0.842732 |
|
Target: 5'- -gGCACCgauuauuccgugagcGGCGCGGGCGUggagacagGCGGCGc -3' miRNA: 3'- uaUGUGGa--------------UUGUGCCUGCA--------UGUCGUu -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 25017 | 0.66 | 0.85106 |
|
Target: 5'- uGUGCGCgUcagcauCGCGGAaGUGCAGCAc -3' miRNA: 3'- -UAUGUGgAuu----GUGCCUgCAUGUCGUu -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 4353 | 0.66 | 0.857388 |
|
Target: 5'- -gACGCC-GGCGCGGAUGUggaugucgaguacgACAGCc- -3' miRNA: 3'- uaUGUGGaUUGUGCCUGCA--------------UGUCGuu -5' |
|||||||
| 28165 | 5' | -50.5 | NC_005887.1 | + | 13393 | 0.66 | 0.86006 |
|
Target: 5'- -aAgGCCggcGCgGCGGACGUcgGCGGCAAg -3' miRNA: 3'- uaUgUGGau-UG-UGCCUGCA--UGUCGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home