miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28166 3' -56.2 NC_005887.1 + 30048 1.11 0.000382
Target:  5'- uCAUAGGCGAGCGCCAGCUCCAUCACCu -3'
miRNA:   3'- -GUAUCCGCUCGCGGUCGAGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 16247 0.78 0.099169
Target:  5'- ---cGGCGAGCGCacgGGCaCCGUCGCCg -3'
miRNA:   3'- guauCCGCUCGCGg--UCGaGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 14295 0.77 0.11453
Target:  5'- aCAUGGGUGgcgcAGCGCCuGCUCgAUCACg -3'
miRNA:   3'- -GUAUCCGC----UCGCGGuCGAGgUAGUGg -5'
28166 3' -56.2 NC_005887.1 + 23961 0.75 0.160856
Target:  5'- gCGUAGGCcaucggguucgcGAGCGCCGGCgcgCCGUCuACg -3'
miRNA:   3'- -GUAUCCG------------CUCGCGGUCGa--GGUAG-UGg -5'
28166 3' -56.2 NC_005887.1 + 18549 0.75 0.16266
Target:  5'- gGUGGGCGgcGGCGCCGGCUucgcgggcgacaugcUCGUCGCg -3'
miRNA:   3'- gUAUCCGC--UCGCGGUCGA---------------GGUAGUGg -5'
28166 3' -56.2 NC_005887.1 + 4914 0.75 0.170058
Target:  5'- --cAGGCaAGCGCCGcGCUCCAcuccgCACCu -3'
miRNA:   3'- guaUCCGcUCGCGGU-CGAGGUa----GUGG- -5'
28166 3' -56.2 NC_005887.1 + 1805 0.74 0.179728
Target:  5'- uCGUGcGCGAGCGCCAGaccgUCGUCGCUg -3'
miRNA:   3'- -GUAUcCGCUCGCGGUCga--GGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 37349 0.73 0.223414
Target:  5'- ---cGGCGGGCGUgAGCUUCAUCGa- -3'
miRNA:   3'- guauCCGCUCGCGgUCGAGGUAGUgg -5'
28166 3' -56.2 NC_005887.1 + 19740 0.73 0.223414
Target:  5'- aGUAGGCGAcGCGCgCAGCgaUCCA-CACg -3'
miRNA:   3'- gUAUCCGCU-CGCG-GUCG--AGGUaGUGg -5'
28166 3' -56.2 NC_005887.1 + 21065 0.73 0.229469
Target:  5'- uGUGGGCGA-CGCCAGCagCgCAUaCGCCg -3'
miRNA:   3'- gUAUCCGCUcGCGGUCGa-G-GUA-GUGG- -5'
28166 3' -56.2 NC_005887.1 + 33858 0.72 0.261847
Target:  5'- --aGGGCGuacgagccugcGGCaGCCGacagcGCUCCGUCGCCg -3'
miRNA:   3'- guaUCCGC-----------UCG-CGGU-----CGAGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 382 0.71 0.29035
Target:  5'- gAUAGGCGAGCGCgCcGCgcaCG-CACCa -3'
miRNA:   3'- gUAUCCGCUCGCG-GuCGag-GUaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 18807 0.71 0.297846
Target:  5'- --cGGGCG-GCGUCAGCguacgcugCCAgcUCACCc -3'
miRNA:   3'- guaUCCGCuCGCGGUCGa-------GGU--AGUGG- -5'
28166 3' -56.2 NC_005887.1 + 28975 0.71 0.313285
Target:  5'- ---cGGCcuucAGCGCgAGCgCCAUCGCCg -3'
miRNA:   3'- guauCCGc---UCGCGgUCGaGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 37490 0.7 0.321229
Target:  5'- --aGGGCG-GCgGUCAGUUCCuugAUCGCCg -3'
miRNA:   3'- guaUCCGCuCG-CGGUCGAGG---UAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 37097 0.7 0.337566
Target:  5'- --cGGGCGAGCacaGCCucGGCgaucgcgcggCCGUCGCCc -3'
miRNA:   3'- guaUCCGCUCG---CGG--UCGa---------GGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 24995 0.7 0.337566
Target:  5'- gGUAGuugcCGAGCGUCAGCUCg--CGCCg -3'
miRNA:   3'- gUAUCc---GCUCGCGGUCGAGguaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 11373 0.7 0.3545
Target:  5'- --cAGcGCGGGCGUCAGCgcagCCGgagCGCUg -3'
miRNA:   3'- guaUC-CGCUCGCGGUCGa---GGUa--GUGG- -5'
28166 3' -56.2 NC_005887.1 + 34062 0.7 0.363188
Target:  5'- ---cGGCGuGUGUCAGCcguuuuucUUCGUCACCg -3'
miRNA:   3'- guauCCGCuCGCGGUCG--------AGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 11399 0.7 0.363188
Target:  5'- aCGUAcGCGGGCGCCGa---CAUCACCg -3'
miRNA:   3'- -GUAUcCGCUCGCGGUcgagGUAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.