Results 21 - 40 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 30955 | 0.69 | 0.399393 |
Target: 5'- ---uGGCG-GCGCCGGCcgCCAgCGCUc -3' miRNA: 3'- guauCCGCuCGCGGUCGa-GGUaGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 27530 | 0.69 | 0.399393 |
Target: 5'- ---cGGCGGGCgGUCAugggcggcGCUCCAUCAUg -3' miRNA: 3'- guauCCGCUCG-CGGU--------CGAGGUAGUGg -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 25516 | 0.69 | 0.408799 |
Target: 5'- ---cGGCGGGUGgCGGCauaaUCGUCGCCg -3' miRNA: 3'- guauCCGCUCGCgGUCGa---GGUAGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 8411 | 0.69 | 0.418341 |
Target: 5'- gCGUGGGcCGAGCacgaCCAGg-CUAUCGCCg -3' miRNA: 3'- -GUAUCC-GCUCGc---GGUCgaGGUAGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 744 | 0.68 | 0.437825 |
Target: 5'- --cGGGCc-GCGCCGGCcgCCG-CACCu -3' miRNA: 3'- guaUCCGcuCGCGGUCGa-GGUaGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 14631 | 0.68 | 0.446761 |
Target: 5'- --aGGGCGcgcucacGGCaGCCGGCgcggugcugcCCGUCGCCg -3' miRNA: 3'- guaUCCGC-------UCG-CGGUCGa---------GGUAGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 36291 | 0.68 | 0.457819 |
Target: 5'- uCGUuGGUGAGUGCCGcgccGCUgCCAccagCACCa -3' miRNA: 3'- -GUAuCCGCUCGCGGU----CGA-GGUa---GUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 5871 | 0.68 | 0.472101 |
Target: 5'- --aAGGCGAGUggggcgacaGCUacgaccggaacgucgAGCUCgGUCGCCa -3' miRNA: 3'- guaUCCGCUCG---------CGG---------------UCGAGgUAGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 37579 | 0.67 | 0.478291 |
Target: 5'- ---cGGCuGGCGUCAGCUuCCcgCGCUc -3' miRNA: 3'- guauCCGcUCGCGGUCGA-GGuaGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 27703 | 0.67 | 0.478291 |
Target: 5'- ---cGGCGAcgggcagcaccGCGCCGGCUgCCGUgagcgCGCCc -3' miRNA: 3'- guauCCGCU-----------CGCGGUCGA-GGUA-----GUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 32495 | 0.67 | 0.478291 |
Target: 5'- aGUAGGCac-CGCUcacaaaAGCUCCAUCugCu -3' miRNA: 3'- gUAUCCGcucGCGG------UCGAGGUAGugG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 23442 | 0.67 | 0.499204 |
Target: 5'- ---cGGUGAGCGCUgcgGGCUgCCggUGCCg -3' miRNA: 3'- guauCCGCUCGCGG---UCGA-GGuaGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 2349 | 0.67 | 0.499204 |
Target: 5'- ---cGGCGGGCGaCCAGCgCUcgCagGCCg -3' miRNA: 3'- guauCCGCUCGC-GGUCGaGGuaG--UGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 36346 | 0.67 | 0.503435 |
Target: 5'- gUAUAGGCcgacgagggggacagGAGCGCguGCUCCugauCCu -3' miRNA: 3'- -GUAUCCG---------------CUCGCGguCGAGGuaguGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 35567 | 0.67 | 0.520513 |
Target: 5'- uGUGcGGCGAGCGCCgGGCacacggCCuUgGCCu -3' miRNA: 3'- gUAU-CCGCUCGCGG-UCGa-----GGuAgUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 24131 | 0.67 | 0.520513 |
Target: 5'- uCGUGcGGUGugaAGCGCCgGGCUUCGagaUCGCCu -3' miRNA: 3'- -GUAU-CCGC---UCGCGG-UCGAGGU---AGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 26627 | 0.67 | 0.531301 |
Target: 5'- gCAgcuGGC--GCGUCAGCUCCuUCACg -3' miRNA: 3'- -GUau-CCGcuCGCGGUCGAGGuAGUGg -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 2497 | 0.67 | 0.531301 |
Target: 5'- ---cGGCGAGCccgGCCuGCUCgugCACCc -3' miRNA: 3'- guauCCGCUCG---CGGuCGAGguaGUGG- -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 30870 | 0.66 | 0.542169 |
Target: 5'- ---uGGUccugaugccaGAGCGCgAGCUCgGUCACg -3' miRNA: 3'- guauCCG----------CUCGCGgUCGAGgUAGUGg -5' |
|||||||
28166 | 3' | -56.2 | NC_005887.1 | + | 20978 | 0.66 | 0.542169 |
Target: 5'- ---uGGCGcuuGGCGCCAcGCUCg--CACCu -3' miRNA: 3'- guauCCGC---UCGCGGU-CGAGguaGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home