miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28166 3' -56.2 NC_005887.1 + 18807 0.71 0.297846
Target:  5'- --cGGGCG-GCGUCAGCguacgcugCCAgcUCACCc -3'
miRNA:   3'- guaUCCGCuCGCGGUCGa-------GGU--AGUGG- -5'
28166 3' -56.2 NC_005887.1 + 19740 0.73 0.223414
Target:  5'- aGUAGGCGAcGCGCgCAGCgaUCCA-CACg -3'
miRNA:   3'- gUAUCCGCU-CGCG-GUCG--AGGUaGUGg -5'
28166 3' -56.2 NC_005887.1 + 20978 0.66 0.542169
Target:  5'- ---uGGCGcuuGGCGCCAcGCUCg--CACCu -3'
miRNA:   3'- guauCCGC---UCGCGGU-CGAGguaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 21065 0.73 0.229469
Target:  5'- uGUGGGCGA-CGCCAGCagCgCAUaCGCCg -3'
miRNA:   3'- gUAUCCGCUcGCGGUCGa-G-GUA-GUGG- -5'
28166 3' -56.2 NC_005887.1 + 23442 0.67 0.499204
Target:  5'- ---cGGUGAGCGCUgcgGGCUgCCggUGCCg -3'
miRNA:   3'- guauCCGCUCGCGG---UCGA-GGuaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 23961 0.75 0.160856
Target:  5'- gCGUAGGCcaucggguucgcGAGCGCCGGCgcgCCGUCuACg -3'
miRNA:   3'- -GUAUCCG------------CUCGCGGUCGa--GGUAG-UGg -5'
28166 3' -56.2 NC_005887.1 + 24131 0.67 0.520513
Target:  5'- uCGUGcGGUGugaAGCGCCgGGCUUCGagaUCGCCu -3'
miRNA:   3'- -GUAU-CCGC---UCGCGG-UCGAGGU---AGUGG- -5'
28166 3' -56.2 NC_005887.1 + 24556 0.66 0.563012
Target:  5'- ---cGGcCGGGCGCCcaugaucgccgucAGCUUCA-CACCu -3'
miRNA:   3'- guauCC-GCUCGCGG-------------UCGAGGUaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 24778 0.66 0.58629
Target:  5'- --cGGGCGuguucgucGCGCCGGUcacguaguUCCAguacgCGCCg -3'
miRNA:   3'- guaUCCGCu-------CGCGGUCG--------AGGUa----GUGG- -5'
28166 3' -56.2 NC_005887.1 + 24995 0.7 0.337566
Target:  5'- gGUAGuugcCGAGCGUCAGCUCg--CGCCg -3'
miRNA:   3'- gUAUCc---GCUCGCGGUCGAGguaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 25516 0.69 0.408799
Target:  5'- ---cGGCGGGUGgCGGCauaaUCGUCGCCg -3'
miRNA:   3'- guauCCGCUCGCgGUCGa---GGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 26241 0.66 0.575178
Target:  5'- ---cGGCGcAGCGCCAccggaaagcGUUUCAcCACCg -3'
miRNA:   3'- guauCCGC-UCGCGGU---------CGAGGUaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 26627 0.67 0.531301
Target:  5'- gCAgcuGGC--GCGUCAGCUCCuUCACg -3'
miRNA:   3'- -GUau-CCGcuCGCGGUCGAGGuAGUGg -5'
28166 3' -56.2 NC_005887.1 + 26832 0.66 0.58629
Target:  5'- gCGUGcGCGAGCgggcgcgucuGCCGGUagCCGUUGCCg -3'
miRNA:   3'- -GUAUcCGCUCG----------CGGUCGa-GGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 27242 0.66 0.56191
Target:  5'- ---cGGCGcaacugcaucgcGCGCCGGCcCgCGUCGCCa -3'
miRNA:   3'- guauCCGCu-----------CGCGGUCGaG-GUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 27530 0.69 0.399393
Target:  5'- ---cGGCGGGCgGUCAugggcggcGCUCCAUCAUg -3'
miRNA:   3'- guauCCGCUCG-CGGU--------CGAGGUAGUGg -5'
28166 3' -56.2 NC_005887.1 + 27703 0.67 0.478291
Target:  5'- ---cGGCGAcgggcagcaccGCGCCGGCUgCCGUgagcgCGCCc -3'
miRNA:   3'- guauCCGCU-----------CGCGGUCGA-GGUA-----GUGG- -5'
28166 3' -56.2 NC_005887.1 + 28059 0.66 0.564116
Target:  5'- --cAGGCGcuGCGCCAcccauGUUCgGUCACg -3'
miRNA:   3'- guaUCCGCu-CGCGGU-----CGAGgUAGUGg -5'
28166 3' -56.2 NC_005887.1 + 28975 0.71 0.313285
Target:  5'- ---cGGCcuucAGCGCgAGCgCCAUCGCCg -3'
miRNA:   3'- guauCCGc---UCGCGgUCGaGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 30048 1.11 0.000382
Target:  5'- uCAUAGGCGAGCGCCAGCUCCAUCACCu -3'
miRNA:   3'- -GUAUCCGCUCGCGGUCGAGGUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.