miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28166 3' -56.2 NC_005887.1 + 40871 0.66 0.575178
Target:  5'- ----cGCGAGCGCC-GCacgCCGUCGgCg -3'
miRNA:   3'- guaucCGCUCGCGGuCGa--GGUAGUgG- -5'
28166 3' -56.2 NC_005887.1 + 40752 0.66 0.597441
Target:  5'- --gAGGCGAuCGCCguuGGCgcgCCGcgCGCCg -3'
miRNA:   3'- guaUCCGCUcGCGG---UCGa--GGUa-GUGG- -5'
28166 3' -56.2 NC_005887.1 + 37579 0.67 0.478291
Target:  5'- ---cGGCuGGCGUCAGCUuCCcgCGCUc -3'
miRNA:   3'- guauCCGcUCGCGGUCGA-GGuaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 37490 0.7 0.321229
Target:  5'- --aGGGCG-GCgGUCAGUUCCuugAUCGCCg -3'
miRNA:   3'- guaUCCGCuCG-CGGUCGAGG---UAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 37349 0.73 0.223414
Target:  5'- ---cGGCGGGCGUgAGCUUCAUCGa- -3'
miRNA:   3'- guauCCGCUCGCGgUCGAGGUAGUgg -5'
28166 3' -56.2 NC_005887.1 + 37097 0.7 0.337566
Target:  5'- --cGGGCGAGCacaGCCucGGCgaucgcgcggCCGUCGCCc -3'
miRNA:   3'- guaUCCGCUCG---CGG--UCGa---------GGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 36346 0.67 0.503435
Target:  5'- gUAUAGGCcgacgagggggacagGAGCGCguGCUCCugauCCu -3'
miRNA:   3'- -GUAUCCG---------------CUCGCGguCGAGGuaguGG- -5'
28166 3' -56.2 NC_005887.1 + 36291 0.68 0.457819
Target:  5'- uCGUuGGUGAGUGCCGcgccGCUgCCAccagCACCa -3'
miRNA:   3'- -GUAuCCGCUCGCGGU----CGA-GGUa---GUGG- -5'
28166 3' -56.2 NC_005887.1 + 35567 0.67 0.520513
Target:  5'- uGUGcGGCGAGCGCCgGGCacacggCCuUgGCCu -3'
miRNA:   3'- gUAU-CCGCUCGCGG-UCGa-----GGuAgUGG- -5'
28166 3' -56.2 NC_005887.1 + 34062 0.7 0.363188
Target:  5'- ---cGGCGuGUGUCAGCcguuuuucUUCGUCACCg -3'
miRNA:   3'- guauCCGCuCGCGGUCG--------AGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 33858 0.72 0.261847
Target:  5'- --aGGGCGuacgagccugcGGCaGCCGacagcGCUCCGUCGCCg -3'
miRNA:   3'- guaUCCGC-----------UCG-CGGU-----CGAGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 32738 0.66 0.55311
Target:  5'- gGUAGcGCGGcgcucgcgugcGCGCCGGCgcgcgCCAUgcaGCCg -3'
miRNA:   3'- gUAUC-CGCU-----------CGCGGUCGa----GGUAg--UGG- -5'
28166 3' -56.2 NC_005887.1 + 32495 0.67 0.478291
Target:  5'- aGUAGGCac-CGCUcacaaaAGCUCCAUCugCu -3'
miRNA:   3'- gUAUCCGcucGCGG------UCGAGGUAGugG- -5'
28166 3' -56.2 NC_005887.1 + 31438 0.66 0.55311
Target:  5'- --cAGGcCGGccgacgucaucuGCGCCGGCUgCAggugCACCg -3'
miRNA:   3'- guaUCC-GCU------------CGCGGUCGAgGUa---GUGG- -5'
28166 3' -56.2 NC_005887.1 + 30955 0.69 0.399393
Target:  5'- ---uGGCG-GCGCCGGCcgCCAgCGCUc -3'
miRNA:   3'- guauCCGCuCGCGGUCGa-GGUaGUGG- -5'
28166 3' -56.2 NC_005887.1 + 30870 0.66 0.542169
Target:  5'- ---uGGUccugaugccaGAGCGCgAGCUCgGUCACg -3'
miRNA:   3'- guauCCG----------CUCGCGgUCGAGgUAGUGg -5'
28166 3' -56.2 NC_005887.1 + 30048 1.11 0.000382
Target:  5'- uCAUAGGCGAGCGCCAGCUCCAUCACCu -3'
miRNA:   3'- -GUAUCCGCUCGCGGUCGAGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 28975 0.71 0.313285
Target:  5'- ---cGGCcuucAGCGCgAGCgCCAUCGCCg -3'
miRNA:   3'- guauCCGc---UCGCGgUCGaGGUAGUGG- -5'
28166 3' -56.2 NC_005887.1 + 28059 0.66 0.564116
Target:  5'- --cAGGCGcuGCGCCAcccauGUUCgGUCACg -3'
miRNA:   3'- guaUCCGCu-CGCGGU-----CGAGgUAGUGg -5'
28166 3' -56.2 NC_005887.1 + 27703 0.67 0.478291
Target:  5'- ---cGGCGAcgggcagcaccGCGCCGGCUgCCGUgagcgCGCCc -3'
miRNA:   3'- guauCCGCU-----------CGCGGUCGA-GGUA-----GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.