Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 3774 | 0.66 | 0.702902 |
Target: 5'- -cGCGgucgGCGCGCgGCucGACgGCGUg -3' miRNA: 3'- caCGCaa--CGCGUGgCGuuUUGaCGUA- -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 4547 | 0.68 | 0.609854 |
Target: 5'- -gGCGaUGaGCACCGacgaGGAACUGCAg -3' miRNA: 3'- caCGCaACgCGUGGCg---UUUUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 4884 | 0.68 | 0.586573 |
Target: 5'- cUG-GUUG-GCGCgGCAGAACUGCGc -3' miRNA: 3'- cACgCAACgCGUGgCGUUUUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 6086 | 0.72 | 0.364393 |
Target: 5'- aUGC---GCGCGCUGCGAAGCUGUAc -3' miRNA: 3'- cACGcaaCGCGUGGCGUUUUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 9056 | 0.66 | 0.71432 |
Target: 5'- -cGCGcUUGUGCGCaGCAGcuuCUGCGUa -3' miRNA: 3'- caCGC-AACGCGUGgCGUUuu-GACGUA- -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 9916 | 0.67 | 0.620364 |
Target: 5'- uGUGCGgcGCGCggcguucagguugGCCGCGcugaccGGCUGCGa -3' miRNA: 3'- -CACGCaaCGCG-------------UGGCGUu-----UUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 10632 | 0.67 | 0.621533 |
Target: 5'- uUGCGcugucccguUUGCgGCGCCgGCGuuGAGCUGCAUa -3' miRNA: 3'- cACGC---------AACG-CGUGG-CGU--UUUGACGUA- -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 11607 | 0.69 | 0.540602 |
Target: 5'- -cGCGcUGCGCGCCGa---GCUGCu- -3' miRNA: 3'- caCGCaACGCGUGGCguuuUGACGua -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 11786 | 0.72 | 0.337653 |
Target: 5'- cGUGCGcgccgUGCGCGCgGCGAAGCgaucuUGCGa -3' miRNA: 3'- -CACGCa----ACGCGUGgCGUUUUG-----ACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 12993 | 0.66 | 0.702902 |
Target: 5'- cUGCGgcaggGaCGCGCuCGCGAAACcgGCGUg -3' miRNA: 3'- cACGCaa---C-GCGUG-GCGUUUUGa-CGUA- -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 13685 | 0.71 | 0.412111 |
Target: 5'- aGUGCGgccgccGCGCGCCGC---GCUGCc- -3' miRNA: 3'- -CACGCaa----CGCGUGGCGuuuUGACGua -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 14928 | 0.72 | 0.373626 |
Target: 5'- -cGCGgUGCGCGCUGUu--GCUGCGg -3' miRNA: 3'- caCGCaACGCGUGGCGuuuUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 14989 | 0.66 | 0.702902 |
Target: 5'- -cGCGgcgUGCGUcgAUCGCGAguGAUUGCAg -3' miRNA: 3'- caCGCa--ACGCG--UGGCGUU--UUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 15950 | 0.66 | 0.702902 |
Target: 5'- -cGCGUcgaGCGCACCGa---GCUGCu- -3' miRNA: 3'- caCGCAa--CGCGUGGCguuuUGACGua -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 16944 | 0.66 | 0.725646 |
Target: 5'- aUGCGUgaGCGCuucaACCGCGcgGCgGCAa -3' miRNA: 3'- cACGCAa-CGCG----UGGCGUuuUGaCGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 17308 | 0.7 | 0.452954 |
Target: 5'- -cGcCGguucgGCGCACCGCGu-GCUGCAc -3' miRNA: 3'- caC-GCaa---CGCGUGGCGUuuUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 17399 | 0.67 | 0.621533 |
Target: 5'- uGUGCGcgucaGCAUCGCGGAAgUGCAg -3' miRNA: 3'- -CACGCaacg-CGUGGCGUUUUgACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 17630 | 0.69 | 0.529287 |
Target: 5'- cUGCGcacgacgGUcaGCGCCGUGAAGCUGCAg -3' miRNA: 3'- cACGCaa-----CG--CGUGGCGUUUUGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 18765 | 0.7 | 0.442535 |
Target: 5'- uGUGCGUguccuUGCccuGCGCCGCAuc-CUGCAc -3' miRNA: 3'- -CACGCA-----ACG---CGUGGCGUuuuGACGUa -5' |
|||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 24009 | 0.67 | 0.621533 |
Target: 5'- gGUGCG-UGCGCagacgGCCGCGAGGCcGaCGUc -3' miRNA: 3'- -CACGCaACGCG-----UGGCGUUUUGaC-GUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home