Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 30494 | 1.06 | 0.001582 |
Target: 5'- cGUGCGUUGCGCACCGCAAAACUGCAUc -3' miRNA: 3'- -CACGCAACGCGUGGCGUUUUGACGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 16944 | 0.66 | 0.725646 |
Target: 5'- aUGCGUgaGCGCuucaACCGCGcgGCgGCAa -3' miRNA: 3'- cACGCAa-CGCG----UGGCGUuuUGaCGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 41609 | 0.66 | 0.725646 |
Target: 5'- gGUGCGgcggccgGCGCGgcCCGUGAGgaucuGCUGCGUc -3' miRNA: 3'- -CACGCaa-----CGCGU--GGCGUUU-----UGACGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 32309 | 0.66 | 0.725646 |
Target: 5'- -aGCcg-GCGCGCCGCAG---UGCGUa -3' miRNA: 3'- caCGcaaCGCGUGGCGUUuugACGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 4547 | 0.68 | 0.609854 |
Target: 5'- -gGCGaUGaGCACCGacgaGGAACUGCAg -3' miRNA: 3'- caCGCaACgCGUGGCg---UUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 32964 | 0.68 | 0.598197 |
Target: 5'- --aCGUUcucGCGCGgCGCGAAACUGCu- -3' miRNA: 3'- cacGCAA---CGCGUgGCGUUUUGACGua -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 17630 | 0.69 | 0.529287 |
Target: 5'- cUGCGcacgacgGUcaGCGCCGUGAAGCUGCAg -3' miRNA: 3'- cACGCaa-----CG--CGUGGCGUUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 17308 | 0.7 | 0.452954 |
Target: 5'- -cGcCGguucgGCGCACCGCGu-GCUGCAc -3' miRNA: 3'- caC-GCaa---CGCGUGGCGUuuUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40769 | 0.71 | 0.422109 |
Target: 5'- -cGCGccGCGCGCCGCcGAGCcgGCGg -3' miRNA: 3'- caCGCaaCGCGUGGCGuUUUGa-CGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 6086 | 0.72 | 0.364393 |
Target: 5'- aUGC---GCGCGCUGCGAAGCUGUAc -3' miRNA: 3'- cACGcaaCGCGUGGCGUUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40141 | 0.79 | 0.134415 |
Target: 5'- gGUGCGcgcUGCGCGCCGCGcucgccgcguguGAGCUGCGc -3' miRNA: 3'- -CACGCa--ACGCGUGGCGU------------UUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 10632 | 0.67 | 0.621533 |
Target: 5'- uUGCGcugucccguUUGCgGCGCCgGCGuuGAGCUGCAUa -3' miRNA: 3'- cACGC---------AACG-CGUGG-CGU--UUUGACGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40745 | 0.66 | 0.679846 |
Target: 5'- cGUGCGc-GCGCGCCagguGCAGGAUggUGCGg -3' miRNA: 3'- -CACGCaaCGCGUGG----CGUUUUG--ACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 30531 | 0.66 | 0.679846 |
Target: 5'- -cGCGUcGCGCACCGCcuguuccAGCccgGCAa -3' miRNA: 3'- caCGCAaCGCGUGGCGuu-----UUGa--CGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 28313 | 0.66 | 0.679846 |
Target: 5'- aGUG-GUgaaGCGcCGCuCGCGAAGCUGCGc -3' miRNA: 3'- -CACgCAa--CGC-GUG-GCGUUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 15950 | 0.66 | 0.702902 |
Target: 5'- -cGCGUcgaGCGCACCGa---GCUGCu- -3' miRNA: 3'- caCGCAa--CGCGUGGCguuuUGACGua -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 14989 | 0.66 | 0.702902 |
Target: 5'- -cGCGgcgUGCGUcgAUCGCGAguGAUUGCAg -3' miRNA: 3'- caCGCa--ACGCG--UGGCGUU--UUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 12993 | 0.66 | 0.702902 |
Target: 5'- cUGCGgcaggGaCGCGCuCGCGAAACcgGCGUg -3' miRNA: 3'- cACGCaa---C-GCGUG-GCGUUUUGa-CGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 3774 | 0.66 | 0.702902 |
Target: 5'- -cGCGgucgGCGCGCgGCucGACgGCGUg -3' miRNA: 3'- caCGCaa--CGCGUGgCGuuUUGaCGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40078 | 0.73 | 0.304268 |
Target: 5'- -cGCGccaugaUGCGCACCGCGAcgucCUGCAUg -3' miRNA: 3'- caCGCa-----ACGCGUGGCGUUuu--GACGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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