Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28167 | 5' | -62.7 | NC_005887.1 | + | 15755 | 0.66 | 0.268386 |
Target: 5'- -aGGGCaugaaguacaaGGCCG-CGGCCGcgaAGGCGCa- -3' miRNA: 3'- caUCCG-----------CCGGCaGCCGGC---UCUGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 17247 | 0.67 | 0.25537 |
Target: 5'- cGUAcGGCGGCgucaauaagauCGUgcCGGgCGAGACGUCGg -3' miRNA: 3'- -CAU-CCGCCG-----------GCA--GCCgGCUCUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 17535 | 0.68 | 0.225094 |
Target: 5'- -aGGGCGGCaugaCGUCGGUCGGcGCGUa- -3' miRNA: 3'- caUCCGCCG----GCAGCCGGCUcUGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 17746 | 0.7 | 0.144139 |
Target: 5'- --cGGCacGGCCGcgCGGCUGAuGGCGCCc -3' miRNA: 3'- cauCCG--CCGGCa-GCCGGCU-CUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 17761 | 0.66 | 0.30326 |
Target: 5'- uGUAGcCGGCCGucacgaacaUCGuGCCGAcGuCGCCAa -3' miRNA: 3'- -CAUCcGCCGGC---------AGC-CGGCU-CuGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 19983 | 0.69 | 0.183022 |
Target: 5'- -cGGGCGGCagCGUCagGGUCGAauagagguaGACGCCGg -3' miRNA: 3'- caUCCGCCG--GCAG--CCGGCU---------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 22917 | 0.74 | 0.083389 |
Target: 5'- --cGGCGGCCGUCGaugguaCCGAGAucUGCCGg -3' miRNA: 3'- cauCCGCCGGCAGCc-----GGCUCU--GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 23247 | 0.71 | 0.136589 |
Target: 5'- --cGGCGGCgGUCGGCgCGcaaaAGGCGCa- -3' miRNA: 3'- cauCCGCCGgCAGCCG-GC----UCUGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 24026 | 0.67 | 0.242876 |
Target: 5'- aGUGGGCcgaGGUCGUCGGUgcgugCGcAGACgGCCGc -3' miRNA: 3'- -CAUCCG---CCGGCAGCCG-----GC-UCUG-CGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 24473 | 0.66 | 0.268386 |
Target: 5'- uUGGcGCGGCCGaUCGuGUCGucGAUGCCc -3' miRNA: 3'- cAUC-CGCCGGC-AGC-CGGCu-CUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 24542 | 0.73 | 0.095778 |
Target: 5'- ---cGCGGCCGcaccuUCGGCCG-GGCGCCc -3' miRNA: 3'- caucCGCCGGC-----AGCCGGCuCUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 25021 | 0.67 | 0.230895 |
Target: 5'- --cGGCGGCCGcCGGCCa----GCCGg -3' miRNA: 3'- cauCCGCCGGCaGCCGGcucugCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 25074 | 0.74 | 0.083389 |
Target: 5'- --cGGCGGCCGcCGGCgCGAgcuGACGCUc -3' miRNA: 3'- cauCCGCCGGCaGCCG-GCU---CUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 26207 | 0.66 | 0.281933 |
Target: 5'- -gGGGCGGCgGU-GGCCGGccugcagcuGGCGCaCGg -3' miRNA: 3'- caUCCGCCGgCAgCCGGCU---------CUGCG-GU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 26330 | 0.66 | 0.275093 |
Target: 5'- -cAGGCcguGGCCGgcgcUGGCCGGGuGCGCgAa -3' miRNA: 3'- caUCCG---CCGGCa---GCCGGCUC-UGCGgU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 27209 | 0.69 | 0.183022 |
Target: 5'- ---cGUGGCCGuUCGGCCGcguGAuCGCCGa -3' miRNA: 3'- caucCGCCGGC-AGCCGGCu--CU-GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 28830 | 0.66 | 0.268386 |
Target: 5'- -cGGcGCGGUac-UGGcCCGGGACGCCAg -3' miRNA: 3'- caUC-CGCCGgcaGCC-GGCUCUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 29415 | 0.67 | 0.230895 |
Target: 5'- -cAGGCucgacaGCuCGUCGGCCGAGuaguCGUCGg -3' miRNA: 3'- caUCCGc-----CG-GCAGCCGGCUCu---GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 30528 | 1.07 | 0.000184 |
Target: 5'- cGUAGGCGGCCGUCGGCCGAGACGCCAc -3' miRNA: 3'- -CAUCCGCCGGCAGCCGGCUCUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 35691 | 0.66 | 0.296016 |
Target: 5'- --cGGCGGCCGgcuucgCGGuuuCCGAGAU-CCAc -3' miRNA: 3'- cauCCGCCGGCa-----GCC---GGCUCUGcGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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