miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28167 5' -62.7 NC_005887.1 + 1588 0.66 0.30326
Target:  5'- gGUGGGUGGgUGgCGGCCucGAacCGCCAa -3'
miRNA:   3'- -CAUCCGCCgGCaGCCGGcuCU--GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 1864 0.66 0.275093
Target:  5'- --cGGCGGCaCGUccuucggguagCGGCCGAcGCGCa- -3'
miRNA:   3'- cauCCGCCG-GCA-----------GCCGGCUcUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 2703 0.73 0.095778
Target:  5'- -cGGGCGGCaagCGGCCGAGcCGCgCGa -3'
miRNA:   3'- caUCCGCCGgcaGCCGGCUCuGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 2889 0.66 0.30326
Target:  5'- -cAGGCgacgacGGacaCGUCGGCCGccgcgaacGACGCCGc -3'
miRNA:   3'- caUCCG------CCg--GCAGCCGGCu-------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 4304 0.67 0.242876
Target:  5'- --cGuGCGGCCGagcgUCGGCgCGAGcagcACGCCu -3'
miRNA:   3'- cauC-CGCCGGC----AGCCG-GCUC----UGCGGu -5'
28167 5' -62.7 NC_005887.1 + 4633 0.67 0.241047
Target:  5'- --cGGUGGCCGcCGGCgCGAucaaggaucucagcGACGCgCAg -3'
miRNA:   3'- cauCCGCCGGCaGCCG-GCU--------------CUGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 5494 0.68 0.224521
Target:  5'- -cGGGCGcGUgGUCGcGCCGGucgcugcGGCGCCGc -3'
miRNA:   3'- caUCCGC-CGgCAGC-CGGCU-------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 5562 0.7 0.160393
Target:  5'- ---uGCGGCCGgugcugCGGCCGGugcuGCGCCAu -3'
miRNA:   3'- caucCGCCGGCa-----GCCGGCUc---UGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 5814 0.66 0.281933
Target:  5'- --cGGCGGCgaucgaGUCGGCgCGGGuCGCgAa -3'
miRNA:   3'- cauCCGCCGg-----CAGCCG-GCUCuGCGgU- -5'
28167 5' -62.7 NC_005887.1 + 7339 0.71 0.132951
Target:  5'- -cGGGCGGCCGg-GGCCGAuGuCGCg- -3'
miRNA:   3'- caUCCGCCGGCagCCGGCU-CuGCGgu -5'
28167 5' -62.7 NC_005887.1 + 9271 0.69 0.187874
Target:  5'- uGUGcaCGGCgGUCGGCaCGGcGACGCCGc -3'
miRNA:   3'- -CAUccGCCGgCAGCCG-GCU-CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 10095 0.66 0.281933
Target:  5'- uGUGGGCGGCC--CGcGCCGAcg-GCCAg -3'
miRNA:   3'- -CAUCCGCCGGcaGC-CGGCUcugCGGU- -5'
28167 5' -62.7 NC_005887.1 + 10165 0.71 0.125943
Target:  5'- -cAGcUGGCCGUCGGCgCGGGcCGCCc -3'
miRNA:   3'- caUCcGCCGGCAGCCG-GCUCuGCGGu -5'
28167 5' -62.7 NC_005887.1 + 11098 0.69 0.18592
Target:  5'- cGUGGcGCaucGGCUGgugcgcgcgaagcUGGCCGAGGCGCCGu -3'
miRNA:   3'- -CAUC-CG---CCGGCa------------GCCGGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 11307 0.67 0.230895
Target:  5'- ---aGCGGCCGgcUCGGCagCGAG-CGCCGc -3'
miRNA:   3'- caucCGCCGGC--AGCCG--GCUCuGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 12637 0.69 0.167789
Target:  5'- --cGGCGgacaccaugcgcauGCCGgCGGCCGucGACGCCAc -3'
miRNA:   3'- cauCCGC--------------CGGCaGCCGGCu-CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 13194 0.7 0.14687
Target:  5'- --cGaGCaGGCCGcCGGCCGAcgugugucgcugcuGACGCCAg -3'
miRNA:   3'- cauC-CG-CCGGCaGCCGGCU--------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 14530 0.71 0.136589
Target:  5'- -aGGcGCGGCCGUCGGCgGc-GCGUCGa -3'
miRNA:   3'- caUC-CGCCGGCAGCCGgCucUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 15620 0.66 0.288907
Target:  5'- -gAGcGCGGUCGcgCGcGCCGAGuCGUCGc -3'
miRNA:   3'- caUC-CGCCGGCa-GC-CGGCUCuGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 15628 0.73 0.098457
Target:  5'- -cAGGCGGCCGggcucGCCGAucagGGCGCCGu -3'
miRNA:   3'- caUCCGCCGGCagc--CGGCU----CUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.