miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28167 5' -62.7 NC_005887.1 + 41650 0.66 0.281933
Target:  5'- cUGGGCcGCCGcUGGCCGAcaggaacgucucGGCGCUg -3'
miRNA:   3'- cAUCCGcCGGCaGCCGGCU------------CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 41609 0.68 0.225094
Target:  5'- gGUGcGGCGGCCGgcgCGGCCcguGAGGaucUGCUg -3'
miRNA:   3'- -CAU-CCGCCGGCa--GCCGG---CUCU---GCGGu -5'
28167 5' -62.7 NC_005887.1 + 40752 0.66 0.275093
Target:  5'- -gAGGCGaucGCCGUUGGCgCGccgcGCGCCGc -3'
miRNA:   3'- caUCCGC---CGGCAGCCG-GCuc--UGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 40099 0.68 0.213862
Target:  5'- cGUAGGcCGGCCGccUCGaGCC---GCGCCAu -3'
miRNA:   3'- -CAUCC-GCCGGC--AGC-CGGcucUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 39621 0.68 0.216069
Target:  5'- uUAGGCGGgcagcCCGUCGcGCgGAuugggguacagagccGGCGCCAg -3'
miRNA:   3'- cAUCCGCC-----GGCAGC-CGgCU---------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 37122 0.66 0.268386
Target:  5'- ---cGCGGCCGUCGcCCGGaaucuucugguuGAUGCCGa -3'
miRNA:   3'- caucCGCCGGCAGCcGGCU------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 35691 0.66 0.296016
Target:  5'- --cGGCGGCCGgcuucgCGGuuuCCGAGAU-CCAc -3'
miRNA:   3'- cauCCGCCGGCa-----GCC---GGCUCUGcGGU- -5'
28167 5' -62.7 NC_005887.1 + 30528 1.07 0.000184
Target:  5'- cGUAGGCGGCCGUCGGCCGAGACGCCAc -3'
miRNA:   3'- -CAUCCGCCGGCAGCCGGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 29415 0.67 0.230895
Target:  5'- -cAGGCucgacaGCuCGUCGGCCGAGuaguCGUCGg -3'
miRNA:   3'- caUCCGc-----CG-GCAGCCGGCUCu---GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 28830 0.66 0.268386
Target:  5'- -cGGcGCGGUac-UGGcCCGGGACGCCAg -3'
miRNA:   3'- caUC-CGCCGgcaGCC-GGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 27209 0.69 0.183022
Target:  5'- ---cGUGGCCGuUCGGCCGcguGAuCGCCGa -3'
miRNA:   3'- caucCGCCGGC-AGCCGGCu--CU-GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 26330 0.66 0.275093
Target:  5'- -cAGGCcguGGCCGgcgcUGGCCGGGuGCGCgAa -3'
miRNA:   3'- caUCCG---CCGGCa---GCCGGCUC-UGCGgU- -5'
28167 5' -62.7 NC_005887.1 + 26207 0.66 0.281933
Target:  5'- -gGGGCGGCgGU-GGCCGGccugcagcuGGCGCaCGg -3'
miRNA:   3'- caUCCGCCGgCAgCCGGCU---------CUGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 25074 0.74 0.083389
Target:  5'- --cGGCGGCCGcCGGCgCGAgcuGACGCUc -3'
miRNA:   3'- cauCCGCCGGCaGCCG-GCU---CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 25021 0.67 0.230895
Target:  5'- --cGGCGGCCGcCGGCCa----GCCGg -3'
miRNA:   3'- cauCCGCCGGCaGCCGGcucugCGGU- -5'
28167 5' -62.7 NC_005887.1 + 24542 0.73 0.095778
Target:  5'- ---cGCGGCCGcaccuUCGGCCG-GGCGCCc -3'
miRNA:   3'- caucCGCCGGC-----AGCCGGCuCUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 24473 0.66 0.268386
Target:  5'- uUGGcGCGGCCGaUCGuGUCGucGAUGCCc -3'
miRNA:   3'- cAUC-CGCCGGC-AGC-CGGCu-CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 24026 0.67 0.242876
Target:  5'- aGUGGGCcgaGGUCGUCGGUgcgugCGcAGACgGCCGc -3'
miRNA:   3'- -CAUCCG---CCGGCAGCCG-----GC-UCUG-CGGU- -5'
28167 5' -62.7 NC_005887.1 + 23247 0.71 0.136589
Target:  5'- --cGGCGGCgGUCGGCgCGcaaaAGGCGCa- -3'
miRNA:   3'- cauCCGCCGgCAGCCG-GC----UCUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 22917 0.74 0.083389
Target:  5'- --cGGCGGCCGUCGaugguaCCGAGAucUGCCGg -3'
miRNA:   3'- cauCCGCCGGCAGCc-----GGCUCU--GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.