miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28167 5' -62.7 NC_005887.1 + 30528 1.07 0.000184
Target:  5'- cGUAGGCGGCCGUCGGCCGAGACGCCAc -3'
miRNA:   3'- -CAUCCGCCGGCAGCCGGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 22917 0.74 0.083389
Target:  5'- --cGGCGGCCGUCGaugguaCCGAGAucUGCCGg -3'
miRNA:   3'- cauCCGCCGGCAGCc-----GGCUCU--GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 25074 0.74 0.083389
Target:  5'- --cGGCGGCCGcCGGCgCGAgcuGACGCUc -3'
miRNA:   3'- cauCCGCCGGCaGCCG-GCU---CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 24542 0.73 0.095778
Target:  5'- ---cGCGGCCGcaccuUCGGCCG-GGCGCCc -3'
miRNA:   3'- caucCGCCGGC-----AGCCGGCuCUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 2703 0.73 0.095778
Target:  5'- -cGGGCGGCaagCGGCCGAGcCGCgCGa -3'
miRNA:   3'- caUCCGCCGgcaGCCGGCUCuGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 15628 0.73 0.098457
Target:  5'- -cAGGCGGCCGggcucGCCGAucagGGCGCCGu -3'
miRNA:   3'- caUCCGCCGGCagc--CGGCU----CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 10165 0.71 0.125943
Target:  5'- -cAGcUGGCCGUCGGCgCGGGcCGCCc -3'
miRNA:   3'- caUCcGCCGGCAGCCG-GCUCuGCGGu -5'
28167 5' -62.7 NC_005887.1 + 7339 0.71 0.132951
Target:  5'- -cGGGCGGCCGg-GGCCGAuGuCGCg- -3'
miRNA:   3'- caUCCGCCGGCagCCGGCU-CuGCGgu -5'
28167 5' -62.7 NC_005887.1 + 14530 0.71 0.136589
Target:  5'- -aGGcGCGGCCGUCGGCgGc-GCGUCGa -3'
miRNA:   3'- caUC-CGCCGGCAGCCGgCucUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 23247 0.71 0.136589
Target:  5'- --cGGCGGCgGUCGGCgCGcaaaAGGCGCa- -3'
miRNA:   3'- cauCCGCCGgCAGCCG-GC----UCUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 17746 0.7 0.144139
Target:  5'- --cGGCacGGCCGcgCGGCUGAuGGCGCCc -3'
miRNA:   3'- cauCCG--CCGGCa-GCCGGCU-CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 13194 0.7 0.14687
Target:  5'- --cGaGCaGGCCGcCGGCCGAcgugugucgcugcuGACGCCAg -3'
miRNA:   3'- cauC-CG-CCGGCaGCCGGCU--------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 5562 0.7 0.160393
Target:  5'- ---uGCGGCCGgugcugCGGCCGGugcuGCGCCAu -3'
miRNA:   3'- caucCGCCGGCa-----GCCGGCUc---UGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 12637 0.69 0.167789
Target:  5'- --cGGCGgacaccaugcgcauGCCGgCGGCCGucGACGCCAc -3'
miRNA:   3'- cauCCGC--------------CGGCaGCCGGCu-CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 27209 0.69 0.183022
Target:  5'- ---cGUGGCCGuUCGGCCGcguGAuCGCCGa -3'
miRNA:   3'- caucCGCCGGC-AGCCGGCu--CU-GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 19983 0.69 0.183022
Target:  5'- -cGGGCGGCagCGUCagGGUCGAauagagguaGACGCCGg -3'
miRNA:   3'- caUCCGCCG--GCAG--CCGGCU---------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 11098 0.69 0.18592
Target:  5'- cGUGGcGCaucGGCUGgugcgcgcgaagcUGGCCGAGGCGCCGu -3'
miRNA:   3'- -CAUC-CG---CCGGCa------------GCCGGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 9271 0.69 0.187874
Target:  5'- uGUGcaCGGCgGUCGGCaCGGcGACGCCGc -3'
miRNA:   3'- -CAUccGCCGgCAGCCG-GCU-CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 40099 0.68 0.213862
Target:  5'- cGUAGGcCGGCCGccUCGaGCC---GCGCCAu -3'
miRNA:   3'- -CAUCC-GCCGGC--AGC-CGGcucUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 39621 0.68 0.216069
Target:  5'- uUAGGCGGgcagcCCGUCGcGCgGAuugggguacagagccGGCGCCAg -3'
miRNA:   3'- cAUCCGCC-----GGCAGC-CGgCU---------------CUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.