miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28167 5' -62.7 NC_005887.1 + 37122 0.66 0.268386
Target:  5'- ---cGCGGCCGUCGcCCGGaaucuucugguuGAUGCCGa -3'
miRNA:   3'- caucCGCCGGCAGCcGGCU------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 25021 0.67 0.230895
Target:  5'- --cGGCGGCCGcCGGCCa----GCCGg -3'
miRNA:   3'- cauCCGCCGGCaGCCGGcucugCGGU- -5'
28167 5' -62.7 NC_005887.1 + 11307 0.67 0.230895
Target:  5'- ---aGCGGCCGgcUCGGCagCGAG-CGCCGc -3'
miRNA:   3'- caucCGCCGGC--AGCCG--GCUCuGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 29415 0.67 0.230895
Target:  5'- -cAGGCucgacaGCuCGUCGGCCGAGuaguCGUCGg -3'
miRNA:   3'- caUCCGc-----CG-GCAGCCGGCUCu---GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 4633 0.67 0.241047
Target:  5'- --cGGUGGCCGcCGGCgCGAucaaggaucucagcGACGCgCAg -3'
miRNA:   3'- cauCCGCCGGCaGCCG-GCU--------------CUGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 17247 0.67 0.25537
Target:  5'- cGUAcGGCGGCgucaauaagauCGUgcCGGgCGAGACGUCGg -3'
miRNA:   3'- -CAU-CCGCCG-----------GCA--GCCgGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 24473 0.66 0.268386
Target:  5'- uUGGcGCGGCCGaUCGuGUCGucGAUGCCc -3'
miRNA:   3'- cAUC-CGCCGGC-AGC-CGGCu-CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 28830 0.66 0.268386
Target:  5'- -cGGcGCGGUac-UGGcCCGGGACGCCAg -3'
miRNA:   3'- caUC-CGCCGgcaGCC-GGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 15755 0.66 0.268386
Target:  5'- -aGGGCaugaaguacaaGGCCG-CGGCCGcgaAGGCGCa- -3'
miRNA:   3'- caUCCG-----------CCGGCaGCCGGC---UCUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 17535 0.68 0.225094
Target:  5'- -aGGGCGGCaugaCGUCGGUCGGcGCGUa- -3'
miRNA:   3'- caUCCGCCG----GCAGCCGGCUcUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 41609 0.68 0.225094
Target:  5'- gGUGcGGCGGCCGgcgCGGCCcguGAGGaucUGCUg -3'
miRNA:   3'- -CAU-CCGCCGGCa--GCCGG---CUCU---GCGGu -5'
28167 5' -62.7 NC_005887.1 + 9271 0.69 0.187874
Target:  5'- uGUGcaCGGCgGUCGGCaCGGcGACGCCGc -3'
miRNA:   3'- -CAUccGCCGgCAGCCG-GCU-CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 2703 0.73 0.095778
Target:  5'- -cGGGCGGCaagCGGCCGAGcCGCgCGa -3'
miRNA:   3'- caUCCGCCGgcaGCCGGCUCuGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 24542 0.73 0.095778
Target:  5'- ---cGCGGCCGcaccuUCGGCCG-GGCGCCc -3'
miRNA:   3'- caucCGCCGGC-----AGCCGGCuCUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 15628 0.73 0.098457
Target:  5'- -cAGGCGGCCGggcucGCCGAucagGGCGCCGu -3'
miRNA:   3'- caUCCGCCGGCagc--CGGCU----CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 14530 0.71 0.136589
Target:  5'- -aGGcGCGGCCGUCGGCgGc-GCGUCGa -3'
miRNA:   3'- caUC-CGCCGGCAGCCGgCucUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 23247 0.71 0.136589
Target:  5'- --cGGCGGCgGUCGGCgCGcaaaAGGCGCa- -3'
miRNA:   3'- cauCCGCCGgCAGCCG-GC----UCUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 17746 0.7 0.144139
Target:  5'- --cGGCacGGCCGcgCGGCUGAuGGCGCCc -3'
miRNA:   3'- cauCCG--CCGGCa-GCCGGCU-CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 13194 0.7 0.14687
Target:  5'- --cGaGCaGGCCGcCGGCCGAcgugugucgcugcuGACGCCAg -3'
miRNA:   3'- cauC-CG-CCGGCaGCCGGCU--------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 11098 0.69 0.18592
Target:  5'- cGUGGcGCaucGGCUGgugcgcgcgaagcUGGCCGAGGCGCCGu -3'
miRNA:   3'- -CAUC-CG---CCGGCa------------GCCGGCUCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.