Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28167 | 5' | -62.7 | NC_005887.1 | + | 17761 | 0.66 | 0.30326 |
Target: 5'- uGUAGcCGGCCGucacgaacaUCGuGCCGAcGuCGCCAa -3' miRNA: 3'- -CAUCcGCCGGC---------AGC-CGGCU-CuGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 12637 | 0.69 | 0.167789 |
Target: 5'- --cGGCGgacaccaugcgcauGCCGgCGGCCGucGACGCCAc -3' miRNA: 3'- cauCCGC--------------CGGCaGCCGGCu-CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 40099 | 0.68 | 0.213862 |
Target: 5'- cGUAGGcCGGCCGccUCGaGCC---GCGCCAu -3' miRNA: 3'- -CAUCC-GCCGGC--AGC-CGGcucUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 39621 | 0.68 | 0.216069 |
Target: 5'- uUAGGCGGgcagcCCGUCGcGCgGAuugggguacagagccGGCGCCAg -3' miRNA: 3'- cAUCCGCC-----GGCAGC-CGgCU---------------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 24026 | 0.67 | 0.242876 |
Target: 5'- aGUGGGCcgaGGUCGUCGGUgcgugCGcAGACgGCCGc -3' miRNA: 3'- -CAUCCG---CCGGCAGCCG-----GC-UCUG-CGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 4304 | 0.67 | 0.242876 |
Target: 5'- --cGuGCGGCCGagcgUCGGCgCGAGcagcACGCCu -3' miRNA: 3'- cauC-CGCCGGC----AGCCG-GCUC----UGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 25074 | 0.74 | 0.083389 |
Target: 5'- --cGGCGGCCGcCGGCgCGAgcuGACGCUc -3' miRNA: 3'- cauCCGCCGGCaGCCG-GCU---CUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 7339 | 0.71 | 0.132951 |
Target: 5'- -cGGGCGGCCGg-GGCCGAuGuCGCg- -3' miRNA: 3'- caUCCGCCGGCagCCGGCU-CuGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 19983 | 0.69 | 0.183022 |
Target: 5'- -cGGGCGGCagCGUCagGGUCGAauagagguaGACGCCGg -3' miRNA: 3'- caUCCGCCG--GCAG--CCGGCU---------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 5494 | 0.68 | 0.224521 |
Target: 5'- -cGGGCGcGUgGUCGcGCCGGucgcugcGGCGCCGc -3' miRNA: 3'- caUCCGC-CGgCAGC-CGGCU-------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 15620 | 0.66 | 0.288907 |
Target: 5'- -gAGcGCGGUCGcgCGcGCCGAGuCGUCGc -3' miRNA: 3'- caUC-CGCCGGCa-GC-CGGCUCuGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 10165 | 0.71 | 0.125943 |
Target: 5'- -cAGcUGGCCGUCGGCgCGGGcCGCCc -3' miRNA: 3'- caUCcGCCGGCAGCCG-GCUCuGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 41650 | 0.66 | 0.281933 |
Target: 5'- cUGGGCcGCCGcUGGCCGAcaggaacgucucGGCGCUg -3' miRNA: 3'- cAUCCGcCGGCaGCCGGCU------------CUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 27209 | 0.69 | 0.183022 |
Target: 5'- ---cGUGGCCGuUCGGCCGcguGAuCGCCGa -3' miRNA: 3'- caucCGCCGGC-AGCCGGCu--CU-GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 22917 | 0.74 | 0.083389 |
Target: 5'- --cGGCGGCCGUCGaugguaCCGAGAucUGCCGg -3' miRNA: 3'- cauCCGCCGGCAGCc-----GGCUCU--GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 1864 | 0.66 | 0.275093 |
Target: 5'- --cGGCGGCaCGUccuucggguagCGGCCGAcGCGCa- -3' miRNA: 3'- cauCCGCCG-GCA-----------GCCGGCUcUGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 5562 | 0.7 | 0.160393 |
Target: 5'- ---uGCGGCCGgugcugCGGCCGGugcuGCGCCAu -3' miRNA: 3'- caucCGCCGGCa-----GCCGGCUc---UGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 29415 | 0.67 | 0.230895 |
Target: 5'- -cAGGCucgacaGCuCGUCGGCCGAGuaguCGUCGg -3' miRNA: 3'- caUCCGc-----CG-GCAGCCGGCUCu---GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 11307 | 0.67 | 0.230895 |
Target: 5'- ---aGCGGCCGgcUCGGCagCGAG-CGCCGc -3' miRNA: 3'- caucCGCCGGC--AGCCG--GCUCuGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 25021 | 0.67 | 0.230895 |
Target: 5'- --cGGCGGCCGcCGGCCa----GCCGg -3' miRNA: 3'- cauCCGCCGGCaGCCGGcucugCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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