miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 6681 0.68 0.719907
Target:  5'- aGGCGUuGUCGGAUccgGUGCCGCCa--- -3'
miRNA:   3'- gCUGCGcUAGCUUG---UACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 968 0.68 0.719907
Target:  5'- gCGACGCgGAUCGAAgccgagGCCGCCu--- -3'
miRNA:   3'- -GCUGCG-CUAGCUUgua---CGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 2544 0.68 0.719907
Target:  5'- aGGCGCuGUCGGGCG-GCUACUGcUUCc -3'
miRNA:   3'- gCUGCGcUAGCUUGUaCGGUGGC-AAG- -5'
28168 3' -52.4 NC_005887.1 + 14544 0.68 0.719907
Target:  5'- gCGGCGCG-UCGAucgGCAUGUCGCgCGc-- -3'
miRNA:   3'- -GCUGCGCuAGCU---UGUACGGUG-GCaag -5'
28168 3' -52.4 NC_005887.1 + 22822 0.67 0.730868
Target:  5'- gCGGCGCaucCGAACGUGCUcaACCGg-- -3'
miRNA:   3'- -GCUGCGcuaGCUUGUACGG--UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 13145 0.67 0.730868
Target:  5'- --cCGCGAUCGAGC--GCCG-CGUUCc -3'
miRNA:   3'- gcuGCGCUAGCUUGuaCGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 13397 0.67 0.741723
Target:  5'- cCGGCGCGG-CGGACGUcggcggcaaGCCGCUGc-- -3'
miRNA:   3'- -GCUGCGCUaGCUUGUA---------CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 1789 0.67 0.749253
Target:  5'- -uGCGCG-UCGGccgcuacccgaaggACGUGCCGCCGa-- -3'
miRNA:   3'- gcUGCGCuAGCU--------------UGUACGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 14828 0.67 0.749253
Target:  5'- gCGACGCuGAUggcgggcacguucgCGGGCGUGCaCACCGc-- -3'
miRNA:   3'- -GCUGCG-CUA--------------GCUUGUACG-GUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 7604 0.67 0.752461
Target:  5'- gCGGCGCcgguuGAUCGAugGgcggcgacUGCUGCCcGUUCa -3'
miRNA:   3'- -GCUGCG-----CUAGCUugU--------ACGGUGG-CAAG- -5'
28168 3' -52.4 NC_005887.1 + 31397 0.67 0.752461
Target:  5'- aCGACGgccCGGUCGGcacgugggACGUGaCCACCGg-- -3'
miRNA:   3'- -GCUGC---GCUAGCU--------UGUAC-GGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 12555 0.67 0.752461
Target:  5'- aCGugGCG-UCG-ACG-GCCGCCGg-- -3'
miRNA:   3'- -GCugCGCuAGCuUGUaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 15272 0.67 0.773531
Target:  5'- -uGCGCGG-CGAGCGU-CCGCCGg-- -3'
miRNA:   3'- gcUGCGCUaGCUUGUAcGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 24747 0.67 0.773531
Target:  5'- ---gGCGGUCGAGgAUGCCgGCCGc-- -3'
miRNA:   3'- gcugCGCUAGCUUgUACGG-UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 24991 0.66 0.783839
Target:  5'- gCGuCGCGAUCGAcaACGgUGCCGauCCGg-- -3'
miRNA:   3'- -GCuGCGCUAGCU--UGU-ACGGU--GGCaag -5'
28168 3' -52.4 NC_005887.1 + 21385 0.66 0.783839
Target:  5'- cCGAUGCGGUCGGcgcgguggGCGUGCC--CGUg- -3'
miRNA:   3'- -GCUGCGCUAGCU--------UGUACGGugGCAag -5'
28168 3' -52.4 NC_005887.1 + 41843 0.66 0.783839
Target:  5'- -cACGCGAUCuGGCGgcgccugaUGCUcguGCCGUUCg -3'
miRNA:   3'- gcUGCGCUAGcUUGU--------ACGG---UGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 17460 0.66 0.787916
Target:  5'- cCGACGUGAUCGAccagcgcguucaacaGCGaGCCcucGCCGa-- -3'
miRNA:   3'- -GCUGCGCUAGCU---------------UGUaCGG---UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 2890 0.66 0.79398
Target:  5'- aGGCGaCGA-CGGACAcgucgGCCGCCGc-- -3'
miRNA:   3'- gCUGC-GCUaGCUUGUa----CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 25587 0.66 0.80394
Target:  5'- uCGGCgGCGA-CGAuUAUGCCGCCa--- -3'
miRNA:   3'- -GCUG-CGCUaGCUuGUACGGUGGcaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.