miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 18705 0.66 0.832624
Target:  5'- gGAacaGCG-UCGAcaGCAgcggGCCGCCGaUCg -3'
miRNA:   3'- gCUg--CGCuAGCU--UGUa---CGGUGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 18743 0.7 0.584596
Target:  5'- aGAuCGCGcaGUCGAACAcGCCACuCGUg- -3'
miRNA:   3'- gCU-GCGC--UAGCUUGUaCGGUG-GCAag -5'
28168 3' -52.4 NC_005887.1 + 21104 0.66 0.832624
Target:  5'- uCGGCGCGGUCGccgcaAACAcggUGCuCGCCa--- -3'
miRNA:   3'- -GCUGCGCUAGC-----UUGU---ACG-GUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 21385 0.66 0.783839
Target:  5'- cCGAUGCGGUCGGcgcgguggGCGUGCC--CGUg- -3'
miRNA:   3'- -GCUGCGCUAGCU--------UGUACGGugGCAag -5'
28168 3' -52.4 NC_005887.1 + 22289 0.69 0.629916
Target:  5'- -cACGCGA-CGAucaGCggGCCACCGUa- -3'
miRNA:   3'- gcUGCGCUaGCU---UGuaCGGUGGCAag -5'
28168 3' -52.4 NC_005887.1 + 22551 0.66 0.823273
Target:  5'- cCGucCGCGAUCG-ACAUGCCcgagacgcugauGCUGgUCg -3'
miRNA:   3'- -GCu-GCGCUAGCuUGUACGG------------UGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 22822 0.67 0.730868
Target:  5'- gCGGCGCaucCGAACGUGCUcaACCGg-- -3'
miRNA:   3'- -GCUGCGcuaGCUUGUACGG--UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 24628 0.66 0.80394
Target:  5'- -cGCGUGGUCGAACAgcugcGUCACgGUg- -3'
miRNA:   3'- gcUGCGCUAGCUUGUa----CGGUGgCAag -5'
28168 3' -52.4 NC_005887.1 + 24747 0.67 0.773531
Target:  5'- ---gGCGGUCGAGgAUGCCgGCCGc-- -3'
miRNA:   3'- gcugCGCUAGCUUgUACGG-UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 24991 0.66 0.783839
Target:  5'- gCGuCGCGAUCGAcaACGgUGCCGauCCGg-- -3'
miRNA:   3'- -GCuGCGCUAGCU--UGU-ACGGU--GGCaag -5'
28168 3' -52.4 NC_005887.1 + 25587 0.66 0.80394
Target:  5'- uCGGCgGCGA-CGAuUAUGCCGCCa--- -3'
miRNA:   3'- -GCUG-CGCUaGCUuGUACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 26340 0.66 0.813708
Target:  5'- cCGGCGCuggccggguGcgCGAACAucaccgggaucuUGCCAgCGUUCc -3'
miRNA:   3'- -GCUGCG---------CuaGCUUGU------------ACGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 26832 0.66 0.832624
Target:  5'- gCGuGCGCGAgCGGGCGcgucUGCCgguaGCCGUUg -3'
miRNA:   3'- -GC-UGCGCUaGCUUGU----ACGG----UGGCAAg -5'
28168 3' -52.4 NC_005887.1 + 27818 0.66 0.823273
Target:  5'- cCGGCGCGcUCGGcAUcgGCCAcuuCCGUcUCu -3'
miRNA:   3'- -GCUGCGCuAGCU-UGuaCGGU---GGCA-AG- -5'
28168 3' -52.4 NC_005887.1 + 28045 0.81 0.128643
Target:  5'- uCGGCGUGAUCGAGCAggcgcugcGCCACCcauGUUCg -3'
miRNA:   3'- -GCUGCGCUAGCUUGUa-------CGGUGG---CAAG- -5'
28168 3' -52.4 NC_005887.1 + 28594 0.77 0.237893
Target:  5'- cCGGCGCGcgUGAGCGUGCCugACCGcaucgUCa -3'
miRNA:   3'- -GCUGCGCuaGCUUGUACGG--UGGCa----AG- -5'
28168 3' -52.4 NC_005887.1 + 30274 0.76 0.2789
Target:  5'- cCGGCGCGA-CGAuCGUGCCGCgcacgaCGUUCg -3'
miRNA:   3'- -GCUGCGCUaGCUuGUACGGUG------GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 31232 1.11 0.00122
Target:  5'- aCGACGCGAUCGAACAUGCCACCGUUCu -3'
miRNA:   3'- -GCUGCGCUAGCUUGUACGGUGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 31382 0.72 0.454709
Target:  5'- uCGACGCGcUCGGcguagcgguGCGUGCCGUgGUUCa -3'
miRNA:   3'- -GCUGCGCuAGCU---------UGUACGGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 31397 0.67 0.752461
Target:  5'- aCGACGgccCGGUCGGcacgugggACGUGaCCACCGg-- -3'
miRNA:   3'- -GCUGC---GCUAGCU--------UGUAC-GGUGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.