miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 12797 0.79 0.180846
Target:  5'- gCGGCGCGAUCGAGCGcauucUGCUGCUGcgCg -3'
miRNA:   3'- -GCUGCGCUAGCUUGU-----ACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 13145 0.67 0.730868
Target:  5'- --cCGCGAUCGAGC--GCCG-CGUUCc -3'
miRNA:   3'- gcuGCGCUAGCUUGuaCGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 13183 0.77 0.244359
Target:  5'- gCGGgaGCGGUCGAGCAgGCCGCCGg-- -3'
miRNA:   3'- -GCUg-CGCUAGCUUGUaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 13397 0.67 0.741723
Target:  5'- cCGGCGCGG-CGGACGUcggcggcaaGCCGCUGc-- -3'
miRNA:   3'- -GCUGCGCUaGCUUGUA---------CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 13543 0.66 0.832624
Target:  5'- gCGaAUGCGAUCGGcgauGCGcUGCCGCCc--- -3'
miRNA:   3'- -GC-UGCGCUAGCU----UGU-ACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 13587 0.66 0.813708
Target:  5'- --uCGCGAUCGuggcgcGCAUGCCcguGCCGg-- -3'
miRNA:   3'- gcuGCGCUAGCu-----UGUACGG---UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 14204 0.72 0.475377
Target:  5'- gGGCGCGGccUCGGACAgggcggcGCCgcGCUGUUCg -3'
miRNA:   3'- gCUGCGCU--AGCUUGUa------CGG--UGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 14238 0.69 0.641277
Target:  5'- nCGGCGCGGcaucCGAucuUGCCGCCGgUCu -3'
miRNA:   3'- -GCUGCGCUa---GCUuguACGGUGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 14544 0.68 0.719907
Target:  5'- gCGGCGCG-UCGAucgGCAUGUCGCgCGc-- -3'
miRNA:   3'- -GCUGCGCuAGCU---UGUACGGUG-GCaag -5'
28168 3' -52.4 NC_005887.1 + 14649 0.66 0.832624
Target:  5'- cCGGCGCGGUgcuGCccGUCGCCGgUUCg -3'
miRNA:   3'- -GCUGCGCUAgcuUGuaCGGUGGC-AAG- -5'
28168 3' -52.4 NC_005887.1 + 14828 0.67 0.749253
Target:  5'- gCGACGCuGAUggcgggcacguucgCGGGCGUGCaCACCGc-- -3'
miRNA:   3'- -GCUGCG-CUA--------------GCUUGUACG-GUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 15272 0.67 0.773531
Target:  5'- -uGCGCGG-CGAGCGU-CCGCCGg-- -3'
miRNA:   3'- gcUGCGCUaGCUUGUAcGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 15480 0.7 0.573348
Target:  5'- aGACGCGuUCGAGCugGCCGCgCGUc- -3'
miRNA:   3'- gCUGCGCuAGCUUGuaCGGUG-GCAag -5'
28168 3' -52.4 NC_005887.1 + 15845 0.68 0.67977
Target:  5'- gCGGCGCGAUCGAgggaaacgcccgcgcGCAgcagGCgCACCa--- -3'
miRNA:   3'- -GCUGCGCUAGCU---------------UGUa---CG-GUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 16435 0.68 0.686519
Target:  5'- uCGACGgGAUCGAgaaccGCGUGCgCGCgGg-- -3'
miRNA:   3'- -GCUGCgCUAGCU-----UGUACG-GUGgCaag -5'
28168 3' -52.4 NC_005887.1 + 16524 0.74 0.368253
Target:  5'- -cGCGCGGUCGAgcGCAUGCCcgcgcgcacGCgGUUCu -3'
miRNA:   3'- gcUGCGCUAGCU--UGUACGG---------UGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 16572 0.7 0.573348
Target:  5'- gCGACGCGAUCGGccugcgACAUcGCCgACCa--- -3'
miRNA:   3'- -GCUGCGCUAGCU------UGUA-CGG-UGGcaag -5'
28168 3' -52.4 NC_005887.1 + 16777 0.72 0.475377
Target:  5'- uCGACGCGAugaaggUCGGGCAgaauuuccuUGCaCGCgCGUUCg -3'
miRNA:   3'- -GCUGCGCU------AGCUUGU---------ACG-GUG-GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 17460 0.66 0.787916
Target:  5'- cCGACGUGAUCGAccagcgcguucaacaGCGaGCCcucGCCGa-- -3'
miRNA:   3'- -GCUGCGCUAGCU---------------UGUaCGG---UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 18636 0.71 0.528952
Target:  5'- aCGcCGCGA-CGAGCAUGUCGCCc--- -3'
miRNA:   3'- -GCuGCGCUaGCUUGUACGGUGGcaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.