miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 601 0.68 0.708854
Target:  5'- cCGGCGCGG-CGcGCGgcgGCCgACgCGUUCa -3'
miRNA:   3'- -GCUGCGCUaGCuUGUa--CGG-UG-GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 968 0.68 0.719907
Target:  5'- gCGACGCgGAUCGAAgccgagGCCGCCu--- -3'
miRNA:   3'- -GCUGCG-CUAGCUUgua---CGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 974 0.69 0.642412
Target:  5'- aCGAgGUGAUCGccgacacgcgcaauuGCcgGCCGCCGUg- -3'
miRNA:   3'- -GCUgCGCUAGCu--------------UGuaCGGUGGCAag -5'
28168 3' -52.4 NC_005887.1 + 1789 0.67 0.749253
Target:  5'- -uGCGCG-UCGGccgcuacccgaaggACGUGCCGCCGa-- -3'
miRNA:   3'- gcUGCGCuAGCU--------------UGUACGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 1839 0.7 0.551014
Target:  5'- cCGACGCGcagGUCGAGCAUGUCgaggAUCGgcUUCg -3'
miRNA:   3'- -GCUGCGC---UAGCUUGUACGG----UGGC--AAG- -5'
28168 3' -52.4 NC_005887.1 + 2544 0.68 0.719907
Target:  5'- aGGCGCuGUCGGGCG-GCUACUGcUUCc -3'
miRNA:   3'- gCUGCGcUAGCUUGUaCGGUGGC-AAG- -5'
28168 3' -52.4 NC_005887.1 + 2890 0.66 0.79398
Target:  5'- aGGCGaCGA-CGGACAcgucgGCCGCCGc-- -3'
miRNA:   3'- gCUGC-GCUaGCUUGUa----CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 6251 0.72 0.474332
Target:  5'- uGAcCGCGAUCGAgggcaaucuaccgACAgGCCACCGcacgUCg -3'
miRNA:   3'- gCU-GCGCUAGCU-------------UGUaCGGUGGCa---AG- -5'
28168 3' -52.4 NC_005887.1 + 6449 0.7 0.562151
Target:  5'- gCGuACGCu-UCGAGCAUGCCGCaGUUg -3'
miRNA:   3'- -GC-UGCGcuAGCUUGUACGGUGgCAAg -5'
28168 3' -52.4 NC_005887.1 + 6681 0.68 0.719907
Target:  5'- aGGCGUuGUCGGAUccgGUGCCGCCa--- -3'
miRNA:   3'- gCUGCGcUAGCUUG---UACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 7576 0.68 0.675262
Target:  5'- uGACGC--UCGGgguCGUGCCGCCGa-- -3'
miRNA:   3'- gCUGCGcuAGCUu--GUACGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 7604 0.67 0.752461
Target:  5'- gCGGCGCcgguuGAUCGAugGgcggcgacUGCUGCCcGUUCa -3'
miRNA:   3'- -GCUGCG-----CUAGCUugU--------ACGGUGG-CAAG- -5'
28168 3' -52.4 NC_005887.1 + 8046 0.72 0.475377
Target:  5'- aCGACGUGcUCGAcGCGUGUCugCGUg- -3'
miRNA:   3'- -GCUGCGCuAGCU-UGUACGGugGCAag -5'
28168 3' -52.4 NC_005887.1 + 8456 0.68 0.675262
Target:  5'- -aACGCGAUCGAGCGcccgGCgcaACCGcUCg -3'
miRNA:   3'- gcUGCGCUAGCUUGUa---CGg--UGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 8931 0.69 0.629916
Target:  5'- gCGuCGCGAUcucgaCGGGCGcGCCGgCGUUCa -3'
miRNA:   3'- -GCuGCGCUA-----GCUUGUaCGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 9309 0.69 0.641277
Target:  5'- aGACGCGAUCGccGACGcGgCGCaGUUCg -3'
miRNA:   3'- gCUGCGCUAGC--UUGUaCgGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 10552 0.68 0.686519
Target:  5'- uCGAUGCGGaccagUCGAGCGUGaucgCGCCGg-- -3'
miRNA:   3'- -GCUGCGCU-----AGCUUGUACg---GUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 10706 0.75 0.309248
Target:  5'- uCGaACGCGAUgGAccGCgcgGUGCCGCUGUUCg -3'
miRNA:   3'- -GC-UGCGCUAgCU--UG---UACGGUGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 11851 0.66 0.80394
Target:  5'- cCGACGCcgcCGAGCAgcgaggacGCCGCCGa-- -3'
miRNA:   3'- -GCUGCGcuaGCUUGUa-------CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 12555 0.67 0.752461
Target:  5'- aCGugGCG-UCG-ACG-GCCGCCGg-- -3'
miRNA:   3'- -GCugCGCuAGCuUGUaCGGUGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.