miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 41843 0.66 0.783839
Target:  5'- -cACGCGAUCuGGCGgcgccugaUGCUcguGCCGUUCg -3'
miRNA:   3'- gcUGCGCUAGcUUGU--------ACGG---UGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 41337 0.66 0.813708
Target:  5'- uGACGcCGGUUGAguacgauccGCGcGCCGCCGg-- -3'
miRNA:   3'- gCUGC-GCUAGCU---------UGUaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 41272 0.69 0.663961
Target:  5'- uGGCGCcGUCGAccugcGCAcgggcgcgcugcUGCCGCCGggCa -3'
miRNA:   3'- gCUGCGcUAGCU-----UGU------------ACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 41016 0.71 0.518043
Target:  5'- cCGAaGCGGUCGAGCAUGCgcuCGgCGUUg -3'
miRNA:   3'- -GCUgCGCUAGCUUGUACG---GUgGCAAg -5'
28168 3' -52.4 NC_005887.1 + 40575 0.69 0.663961
Target:  5'- uCGGCGCGcUCGAGCAaguacaacCCGCgGUUCc -3'
miRNA:   3'- -GCUGCGCuAGCUUGUac------GGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 40030 0.7 0.573348
Target:  5'- uGGCGCGGcUCGAggcgGCcgGCCuacgcccgauACCGUUCc -3'
miRNA:   3'- gCUGCGCU-AGCU----UGuaCGG----------UGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 39467 0.66 0.813708
Target:  5'- cCGaACGCGGUCGcgaccACGguugcGCCGCCGgccUCg -3'
miRNA:   3'- -GC-UGCGCUAGCu----UGUa----CGGUGGCa--AG- -5'
28168 3' -52.4 NC_005887.1 + 38997 0.7 0.562151
Target:  5'- uGGCG-GAUUGuuuCGUGCCACCGcgCa -3'
miRNA:   3'- gCUGCgCUAGCuu-GUACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 35993 0.66 0.823273
Target:  5'- uGAUGUGcUCGAuggACA-GCCGuuGUUCa -3'
miRNA:   3'- gCUGCGCuAGCU---UGUaCGGUggCAAG- -5'
28168 3' -52.4 NC_005887.1 + 35410 0.68 0.708854
Target:  5'- gGGCGUGAagcUCGuGGCcgGCCGCCGc-- -3'
miRNA:   3'- gCUGCGCU---AGC-UUGuaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 33785 0.73 0.434536
Target:  5'- uCGcCGCGAUCGAGCAgaucGaCCGCCGcgCc -3'
miRNA:   3'- -GCuGCGCUAGCUUGUa---C-GGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 33285 0.72 0.485886
Target:  5'- aCGGCGCGAcCGAGugccaGUGCgGCgCGUUCa -3'
miRNA:   3'- -GCUGCGCUaGCUUg----UACGgUG-GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 33067 0.69 0.641277
Target:  5'- aCGGCaGCGuGUCGcGCAUGaCCACCGa-- -3'
miRNA:   3'- -GCUG-CGC-UAGCuUGUAC-GGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 32640 0.72 0.475377
Target:  5'- aCGAUGUGAUCGAcCGUGUgcagcuCACCGgugUCg -3'
miRNA:   3'- -GCUGCGCUAGCUuGUACG------GUGGCa--AG- -5'
28168 3' -52.4 NC_005887.1 + 31397 0.67 0.752461
Target:  5'- aCGACGgccCGGUCGGcacgugggACGUGaCCACCGg-- -3'
miRNA:   3'- -GCUGC---GCUAGCU--------UGUAC-GGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 31382 0.72 0.454709
Target:  5'- uCGACGCGcUCGGcguagcgguGCGUGCCGUgGUUCa -3'
miRNA:   3'- -GCUGCGCuAGCU---------UGUACGGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 31232 1.11 0.00122
Target:  5'- aCGACGCGAUCGAACAUGCCACCGUUCu -3'
miRNA:   3'- -GCUGCGCUAGCUUGUACGGUGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 30274 0.76 0.2789
Target:  5'- cCGGCGCGA-CGAuCGUGCCGCgcacgaCGUUCg -3'
miRNA:   3'- -GCUGCGCUaGCUuGUACGGUG------GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 28594 0.77 0.237893
Target:  5'- cCGGCGCGcgUGAGCGUGCCugACCGcaucgUCa -3'
miRNA:   3'- -GCUGCGCuaGCUUGUACGG--UGGCa----AG- -5'
28168 3' -52.4 NC_005887.1 + 28045 0.81 0.128643
Target:  5'- uCGGCGUGAUCGAGCAggcgcugcGCCACCcauGUUCg -3'
miRNA:   3'- -GCUGCGCUAGCUUGUa-------CGGUGG---CAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.