miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 15845 0.68 0.67977
Target:  5'- gCGGCGCGAUCGAgggaaacgcccgcgcGCAgcagGCgCACCa--- -3'
miRNA:   3'- -GCUGCGCUAGCU---------------UGUa---CG-GUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 15480 0.7 0.573348
Target:  5'- aGACGCGuUCGAGCugGCCGCgCGUc- -3'
miRNA:   3'- gCUGCGCuAGCUUGuaCGGUG-GCAag -5'
28168 3' -52.4 NC_005887.1 + 40030 0.7 0.573348
Target:  5'- uGGCGCGGcUCGAggcgGCcgGCCuacgcccgauACCGUUCc -3'
miRNA:   3'- gCUGCGCU-AGCU----UGuaCGG----------UGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 18743 0.7 0.584596
Target:  5'- aGAuCGCGcaGUCGAACAcGCCACuCGUg- -3'
miRNA:   3'- gCU-GCGC--UAGCUUGUaCGGUG-GCAag -5'
28168 3' -52.4 NC_005887.1 + 14238 0.69 0.641277
Target:  5'- nCGGCGCGGcaucCGAucuUGCCGCCGgUCu -3'
miRNA:   3'- -GCUGCGCUa---GCUuguACGGUGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 974 0.69 0.642412
Target:  5'- aCGAgGUGAUCGccgacacgcgcaauuGCcgGCCGCCGUg- -3'
miRNA:   3'- -GCUgCGCUAGCu--------------UGuaCGGUGGCAag -5'
28168 3' -52.4 NC_005887.1 + 41272 0.69 0.663961
Target:  5'- uGGCGCcGUCGAccugcGCAcgggcgcgcugcUGCCGCCGggCa -3'
miRNA:   3'- gCUGCGcUAGCU-----UGU------------ACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 40575 0.69 0.663961
Target:  5'- uCGGCGCGcUCGAGCAaguacaacCCGCgGUUCc -3'
miRNA:   3'- -GCUGCGCuAGCUUGUac------GGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 8456 0.68 0.675262
Target:  5'- -aACGCGAUCGAGCGcccgGCgcaACCGcUCg -3'
miRNA:   3'- gcUGCGCUAGCUUGUa---CGg--UGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 38997 0.7 0.562151
Target:  5'- uGGCG-GAUUGuuuCGUGCCACCGcgCa -3'
miRNA:   3'- gCUGCgCUAGCuu-GUACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 32640 0.72 0.475377
Target:  5'- aCGAUGUGAUCGAcCGUGUgcagcuCACCGgugUCg -3'
miRNA:   3'- -GCUGCGCUAGCUuGUACG------GUGGCa--AG- -5'
28168 3' -52.4 NC_005887.1 + 16777 0.72 0.475377
Target:  5'- uCGACGCGAugaaggUCGGGCAgaauuuccuUGCaCGCgCGUUCg -3'
miRNA:   3'- -GCUGCGCU------AGCUUGU---------ACG-GUG-GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 28045 0.81 0.128643
Target:  5'- uCGGCGUGAUCGAGCAggcgcugcGCCACCcauGUUCg -3'
miRNA:   3'- -GCUGCGCUAGCUUGUa-------CGGUGG---CAAG- -5'
28168 3' -52.4 NC_005887.1 + 13183 0.77 0.244359
Target:  5'- gCGGgaGCGGUCGAGCAgGCCGCCGg-- -3'
miRNA:   3'- -GCUg-CGCUAGCUUGUaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 30274 0.76 0.2789
Target:  5'- cCGGCGCGA-CGAuCGUGCCGCgcacgaCGUUCg -3'
miRNA:   3'- -GCUGCGCUaGCUuGUACGGUG------GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 10706 0.75 0.309248
Target:  5'- uCGaACGCGAUgGAccGCgcgGUGCCGCUGUUCg -3'
miRNA:   3'- -GC-UGCGCUAgCU--UG---UACGGUGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 31382 0.72 0.454709
Target:  5'- uCGACGCGcUCGGcguagcgguGCGUGCCGUgGUUCa -3'
miRNA:   3'- -GCUGCGCuAGCU---------UGUACGGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 6251 0.72 0.474332
Target:  5'- uGAcCGCGAUCGAgggcaaucuaccgACAgGCCACCGcacgUCg -3'
miRNA:   3'- gCU-GCGCUAGCU-------------UGUaCGGUGGCa---AG- -5'
28168 3' -52.4 NC_005887.1 + 8046 0.72 0.475377
Target:  5'- aCGACGUGcUCGAcGCGUGUCugCGUg- -3'
miRNA:   3'- -GCUGCGCuAGCU-UGUACGGugGCAag -5'
28168 3' -52.4 NC_005887.1 + 14204 0.72 0.475377
Target:  5'- gGGCGCGGccUCGGACAgggcggcGCCgcGCUGUUCg -3'
miRNA:   3'- gCUGCGCU--AGCUUGUa------CGG--UGGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.