miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 18705 0.66 0.832624
Target:  5'- gGAacaGCG-UCGAcaGCAgcggGCCGCCGaUCg -3'
miRNA:   3'- gCUg--CGCuAGCU--UGUa---CGGUGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 7576 0.68 0.675262
Target:  5'- uGACGC--UCGGgguCGUGCCGCCGa-- -3'
miRNA:   3'- gCUGCGcuAGCUu--GUACGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 9309 0.69 0.641277
Target:  5'- aGACGCGAUCGccGACGcGgCGCaGUUCg -3'
miRNA:   3'- gCUGCGCUAGC--UUGUaCgGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 12797 0.79 0.180846
Target:  5'- gCGGCGCGAUCGAGCGcauucUGCUGCUGcgCg -3'
miRNA:   3'- -GCUGCGCUAGCUUGU-----ACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 11851 0.66 0.80394
Target:  5'- cCGACGCcgcCGAGCAgcgaggacGCCGCCGa-- -3'
miRNA:   3'- -GCUGCGcuaGCUUGUa-------CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 25587 0.66 0.80394
Target:  5'- uCGGCgGCGA-CGAuUAUGCCGCCa--- -3'
miRNA:   3'- -GCUG-CGCUaGCUuGUACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 21385 0.66 0.783839
Target:  5'- cCGAUGCGGUCGGcgcgguggGCGUGCC--CGUg- -3'
miRNA:   3'- -GCUGCGCUAGCU--------UGUACGGugGCAag -5'
28168 3' -52.4 NC_005887.1 + 24991 0.66 0.783839
Target:  5'- gCGuCGCGAUCGAcaACGgUGCCGauCCGg-- -3'
miRNA:   3'- -GCuGCGCUAGCU--UGU-ACGGU--GGCaag -5'
28168 3' -52.4 NC_005887.1 + 13145 0.67 0.730868
Target:  5'- --cCGCGAUCGAGC--GCCG-CGUUCc -3'
miRNA:   3'- gcuGCGCUAGCUUGuaCGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 10552 0.68 0.686519
Target:  5'- uCGAUGCGGaccagUCGAGCGUGaucgCGCCGg-- -3'
miRNA:   3'- -GCUGCGCU-----AGCUUGUACg---GUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 6681 0.68 0.719907
Target:  5'- aGGCGUuGUCGGAUccgGUGCCGCCa--- -3'
miRNA:   3'- gCUGCGcUAGCUUG---UACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 31397 0.67 0.752461
Target:  5'- aCGACGgccCGGUCGGcacgugggACGUGaCCACCGg-- -3'
miRNA:   3'- -GCUGC---GCUAGCU--------UGUAC-GGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 27818 0.66 0.823273
Target:  5'- cCGGCGCGcUCGGcAUcgGCCAcuuCCGUcUCu -3'
miRNA:   3'- -GCUGCGCuAGCU-UGuaCGGU---GGCA-AG- -5'
28168 3' -52.4 NC_005887.1 + 601 0.68 0.708854
Target:  5'- cCGGCGCGG-CGcGCGgcgGCCgACgCGUUCa -3'
miRNA:   3'- -GCUGCGCUaGCuUGUa--CGG-UG-GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 39467 0.66 0.813708
Target:  5'- cCGaACGCGGUCGcgaccACGguugcGCCGCCGgccUCg -3'
miRNA:   3'- -GC-UGCGCUAGCu----UGUa----CGGUGGCa--AG- -5'
28168 3' -52.4 NC_005887.1 + 24747 0.67 0.773531
Target:  5'- ---gGCGGUCGAGgAUGCCgGCCGc-- -3'
miRNA:   3'- gcugCGCUAGCUUgUACGG-UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 35410 0.68 0.708854
Target:  5'- gGGCGUGAagcUCGuGGCcgGCCGCCGc-- -3'
miRNA:   3'- gCUGCGCU---AGC-UUGuaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 33067 0.69 0.641277
Target:  5'- aCGGCaGCGuGUCGcGCAUGaCCACCGa-- -3'
miRNA:   3'- -GCUG-CGC-UAGCuUGUAC-GGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 13587 0.66 0.813708
Target:  5'- --uCGCGAUCGuggcgcGCAUGCCcguGCCGg-- -3'
miRNA:   3'- gcuGCGCUAGCu-----UGUACGG---UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 17460 0.66 0.787916
Target:  5'- cCGACGUGAUCGAccagcgcguucaacaGCGaGCCcucGCCGa-- -3'
miRNA:   3'- -GCUGCGCUAGCU---------------UGUaCGG---UGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.