miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 5' -58 NC_005887.1 + 532 0.69 0.35197
Target:  5'- -aACgCGUCGGCCGC--CGcgCGCCg -3'
miRNA:   3'- caUGaGCAGCCGGCGcaGCuaGCGGa -5'
28168 5' -58 NC_005887.1 + 827 0.66 0.523398
Target:  5'- aUGCUCGcgcgaucgCGGCCGCGaaGAaaGCCa -3'
miRNA:   3'- cAUGAGCa-------GCCGGCGCagCUagCGGa -5'
28168 5' -58 NC_005887.1 + 2036 0.67 0.423271
Target:  5'- gGUugUCGauguucUCGGCCGCcggGUucacgacccacCGAUCGCCg -3'
miRNA:   3'- -CAugAGC------AGCCGGCG---CA-----------GCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 2422 0.69 0.343678
Target:  5'- ---gUCGUCGGCCugcgaGCGcUGGUCGCCc -3'
miRNA:   3'- caugAGCAGCCGG-----CGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 2486 0.66 0.523398
Target:  5'- -cAUUCGUCGG-CGCGggcuUCGCCUc -3'
miRNA:   3'- caUGAGCAGCCgGCGCagcuAGCGGA- -5'
28168 5' -58 NC_005887.1 + 2979 0.69 0.343678
Target:  5'- -aGCUUGgCGGCgGCGUCGuUCGCg- -3'
miRNA:   3'- caUGAGCaGCCGgCGCAGCuAGCGga -5'
28168 5' -58 NC_005887.1 + 5502 0.66 0.48208
Target:  5'- aGUGCcagCGggcgcgUGGUCGCGcCGGUCGCUg -3'
miRNA:   3'- -CAUGa--GCa-----GCCGGCGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 7302 0.68 0.413892
Target:  5'- -gGgUCGUCGuGUCGcCGUCcGUCGCCg -3'
miRNA:   3'- caUgAGCAGC-CGGC-GCAGcUAGCGGa -5'
28168 5' -58 NC_005887.1 + 7427 0.7 0.296907
Target:  5'- cGUugUCGUCGGUcugcagCGCGaUCGAauacguuucgUCGCCa -3'
miRNA:   3'- -CAugAGCAGCCG------GCGC-AGCU----------AGCGGa -5'
28168 5' -58 NC_005887.1 + 9545 0.72 0.236256
Target:  5'- -----gGUCGGCCGgGUCGuucGUCGCCa -3'
miRNA:   3'- caugagCAGCCGGCgCAGC---UAGCGGa -5'
28168 5' -58 NC_005887.1 + 10198 0.67 0.471996
Target:  5'- --uUUCGUCGagugcGUCGCGUCGAUgcccgCGCCg -3'
miRNA:   3'- cauGAGCAGC-----CGGCGCAGCUA-----GCGGa -5'
28168 5' -58 NC_005887.1 + 11786 0.66 0.512932
Target:  5'- cGUcCUCGcugcUCGGCgGCGUCGGUucguaCGCUa -3'
miRNA:   3'- -CAuGAGC----AGCCGgCGCAGCUA-----GCGGa -5'
28168 5' -58 NC_005887.1 + 13631 0.68 0.385647
Target:  5'- -cGCgUCGUCGGCCugcucggGCGgcagCGcAUCGCCg -3'
miRNA:   3'- caUG-AGCAGCCGG-------CGCa---GC-UAGCGGa -5'
28168 5' -58 NC_005887.1 + 13696 0.67 0.452154
Target:  5'- cUGCUCGgcugagugCGGCCGC--CGcgCGCCg -3'
miRNA:   3'- cAUGAGCa-------GCCGGCGcaGCuaGCGGa -5'
28168 5' -58 NC_005887.1 + 14536 0.75 0.150018
Target:  5'- -gGC-CGUCGGCggCGCGUCGAUCGgCa -3'
miRNA:   3'- caUGaGCAGCCG--GCGCAGCUAGCgGa -5'
28168 5' -58 NC_005887.1 + 14609 0.66 0.523398
Target:  5'- cGUACggcCGUCGGCgC-CGUCGAgggCGCgCUc -3'
miRNA:   3'- -CAUGa--GCAGCCG-GcGCAGCUa--GCG-GA- -5'
28168 5' -58 NC_005887.1 + 14697 0.66 0.520249
Target:  5'- -gGCUCGUcgcggcgggcgggcCGGgCGCGgCGAUCGCg- -3'
miRNA:   3'- caUGAGCA--------------GCCgGCGCaGCUAGCGga -5'
28168 5' -58 NC_005887.1 + 14786 0.7 0.319651
Target:  5'- ---aUCGUCGcCUGCG-CGAUCGCCg -3'
miRNA:   3'- caugAGCAGCcGGCGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 15001 0.72 0.236256
Target:  5'- cGUACggcagCGcgCGGCgUGCGUCGAUCGCg- -3'
miRNA:   3'- -CAUGa----GCa-GCCG-GCGCAGCUAGCGga -5'
28168 5' -58 NC_005887.1 + 15967 0.66 0.523398
Target:  5'- -cGCagGUCGGCCagcugcGCGUCGAgCGCa- -3'
miRNA:   3'- caUGagCAGCCGG------CGCAGCUaGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.