miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 5' -58 NC_005887.1 + 14609 0.66 0.523398
Target:  5'- cGUACggcCGUCGGCgC-CGUCGAgggCGCgCUc -3'
miRNA:   3'- -CAUGa--GCAGCCG-GcGCAGCUa--GCG-GA- -5'
28168 5' -58 NC_005887.1 + 10198 0.67 0.471996
Target:  5'- --uUUCGUCGagugcGUCGCGUCGAUgcccgCGCCg -3'
miRNA:   3'- cauGAGCAGC-----CGGCGCAGCUA-----GCGGa -5'
28168 5' -58 NC_005887.1 + 31336 0.67 0.471996
Target:  5'- cGUGC-CGaccgGGCCGuCGUCGAUgGCCc -3'
miRNA:   3'- -CAUGaGCag--CCGGC-GCAGCUAgCGGa -5'
28168 5' -58 NC_005887.1 + 40735 0.66 0.48208
Target:  5'- -aGgUCGcCGcCCGCGUCGAggcgaUCGCCg -3'
miRNA:   3'- caUgAGCaGCcGGCGCAGCU-----AGCGGa -5'
28168 5' -58 NC_005887.1 + 11786 0.66 0.512932
Target:  5'- cGUcCUCGcugcUCGGCgGCGUCGGUucguaCGCUa -3'
miRNA:   3'- -CAuGAGC----AGCCGgCGCAGCUA-----GCGGa -5'
28168 5' -58 NC_005887.1 + 14697 0.66 0.520249
Target:  5'- -gGCUCGUcgcggcgggcgggcCGGgCGCGgCGAUCGCg- -3'
miRNA:   3'- caUGAGCA--------------GCCgGCGCaGCUAGCGga -5'
28168 5' -58 NC_005887.1 + 35225 0.66 0.523398
Target:  5'- -aGCUUGUCGGCCuGCGUgGGgcugaugaGCUUg -3'
miRNA:   3'- caUGAGCAGCCGG-CGCAgCUag------CGGA- -5'
28168 5' -58 NC_005887.1 + 41955 0.66 0.523398
Target:  5'- cGUGCUCGcgUGGUgcgugCGCGgcgCGcUCGCCUa -3'
miRNA:   3'- -CAUGAGCa-GCCG-----GCGCa--GCuAGCGGA- -5'
28168 5' -58 NC_005887.1 + 827 0.66 0.523398
Target:  5'- aUGCUCGcgcgaucgCGGCCGCGaaGAaaGCCa -3'
miRNA:   3'- cAUGAGCa-------GCCGGCGCagCUagCGGa -5'
28168 5' -58 NC_005887.1 + 30091 0.67 0.462019
Target:  5'- uGUACUUGUCGaCCGCuUCGAcggcuaCGCCg -3'
miRNA:   3'- -CAUGAGCAGCcGGCGcAGCUa-----GCGGa -5'
28168 5' -58 NC_005887.1 + 22773 0.67 0.462019
Target:  5'- cGUGCUCGUUGGCUcgacgccgGCG-CGGcCGCUg -3'
miRNA:   3'- -CAUGAGCAGCCGG--------CGCaGCUaGCGGa -5'
28168 5' -58 NC_005887.1 + 7302 0.68 0.413892
Target:  5'- -gGgUCGUCGuGUCGcCGUCcGUCGCCg -3'
miRNA:   3'- caUgAGCAGC-CGGC-GCAGcUAGCGGa -5'
28168 5' -58 NC_005887.1 + 27323 0.75 0.13814
Target:  5'- -cACUCGUcCGGCCaCGUCGAcugCGCCa -3'
miRNA:   3'- caUGAGCA-GCCGGcGCAGCUa--GCGGa -5'
28168 5' -58 NC_005887.1 + 29425 0.75 0.13814
Target:  5'- -aGCUCGUCGGCCGaguaGUCGucggCGUCa -3'
miRNA:   3'- caUGAGCAGCCGGCg---CAGCua--GCGGa -5'
28168 5' -58 NC_005887.1 + 14536 0.75 0.150018
Target:  5'- -gGC-CGUCGGCggCGCGUCGAUCGgCa -3'
miRNA:   3'- caUGaGCAGCCG--GCGCAGCUAGCgGa -5'
28168 5' -58 NC_005887.1 + 35829 0.7 0.296907
Target:  5'- --cCUCGUgcGCCGCGUCGGcguagaucaUCGCCUg -3'
miRNA:   3'- cauGAGCAgcCGGCGCAGCU---------AGCGGA- -5'
28168 5' -58 NC_005887.1 + 30723 0.69 0.335527
Target:  5'- -aGCUUGUCGcGCUGCGUggccuucgCGAcuUCGCCg -3'
miRNA:   3'- caUGAGCAGC-CGGCGCA--------GCU--AGCGGa -5'
28168 5' -58 NC_005887.1 + 532 0.69 0.35197
Target:  5'- -aACgCGUCGGCCGC--CGcgCGCCg -3'
miRNA:   3'- caUGaGCAGCCGGCGcaGCuaGCGGa -5'
28168 5' -58 NC_005887.1 + 17742 0.68 0.395523
Target:  5'- -cGCUCGgcaCGGCCGCG-CGGcugauggCGCCc -3'
miRNA:   3'- caUGAGCa--GCCGGCGCaGCUa------GCGGa -5'
28168 5' -58 NC_005887.1 + 38092 0.68 0.413892
Target:  5'- aGUGCUCGUCGcgcuuGCCGUGcUCcAUCGCg- -3'
miRNA:   3'- -CAUGAGCAGC-----CGGCGC-AGcUAGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.