miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 5' -58 NC_005887.1 + 37051 0.68 0.413892
Target:  5'- cGUGCUCGcCGGCgagcucgaccCGCG-CGA-CGCCg -3'
miRNA:   3'- -CAUGAGCaGCCG----------GCGCaGCUaGCGGa -5'
28168 5' -58 NC_005887.1 + 7302 0.68 0.413892
Target:  5'- -gGgUCGUCGuGUCGcCGUCcGUCGCCg -3'
miRNA:   3'- caUgAGCAGC-CGGC-GCAGcUAGCGGa -5'
28168 5' -58 NC_005887.1 + 38092 0.68 0.413892
Target:  5'- aGUGCUCGUCGcgcuuGCCGUGcUCcAUCGCg- -3'
miRNA:   3'- -CAUGAGCAGC-----CGGCGC-AGcUAGCGga -5'
28168 5' -58 NC_005887.1 + 22860 0.68 0.395523
Target:  5'- -aGCUCGUgaacaacagCGGCCGCGcCGG-CGUCg -3'
miRNA:   3'- caUGAGCA---------GCCGGCGCaGCUaGCGGa -5'
28168 5' -58 NC_005887.1 + 17742 0.68 0.395523
Target:  5'- -cGCUCGgcaCGGCCGCG-CGGcugauggCGCCc -3'
miRNA:   3'- caUGAGCa--GCCGGCGCaGCUa------GCGGa -5'
28168 5' -58 NC_005887.1 + 13631 0.68 0.385647
Target:  5'- -cGCgUCGUCGGCCugcucggGCGgcagCGcAUCGCCg -3'
miRNA:   3'- caUG-AGCAGCCGG-------CGCa---GC-UAGCGGa -5'
28168 5' -58 NC_005887.1 + 532 0.69 0.35197
Target:  5'- -aACgCGUCGGCCGC--CGcgCGCCg -3'
miRNA:   3'- caUGaGCAGCCGGCGcaGCuaGCGGa -5'
28168 5' -58 NC_005887.1 + 2422 0.69 0.343678
Target:  5'- ---gUCGUCGGCCugcgaGCGcUGGUCGCCc -3'
miRNA:   3'- caugAGCAGCCGG-----CGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 2979 0.69 0.343678
Target:  5'- -aGCUUGgCGGCgGCGUCGuUCGCg- -3'
miRNA:   3'- caUGAGCaGCCGgCGCAGCuAGCGga -5'
28168 5' -58 NC_005887.1 + 16587 0.69 0.343678
Target:  5'- -cACUCGgcgcCGGCgGCGacgCGAUCgGCCUg -3'
miRNA:   3'- caUGAGCa---GCCGgCGCa--GCUAG-CGGA- -5'
28168 5' -58 NC_005887.1 + 30723 0.69 0.335527
Target:  5'- -aGCUUGUCGcGCUGCGUggccuucgCGAcuUCGCCg -3'
miRNA:   3'- caUGAGCAGC-CGGCGCA--------GCU--AGCGGa -5'
28168 5' -58 NC_005887.1 + 17250 0.69 0.327518
Target:  5'- uUGCcgCGUgCGGCCGCGuUCGcgCGCUc -3'
miRNA:   3'- cAUGa-GCA-GCCGGCGC-AGCuaGCGGa -5'
28168 5' -58 NC_005887.1 + 14786 0.7 0.319651
Target:  5'- ---aUCGUCGcCUGCG-CGAUCGCCg -3'
miRNA:   3'- caugAGCAGCcGGCGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 7427 0.7 0.296907
Target:  5'- cGUugUCGUCGGUcugcagCGCGaUCGAauacguuucgUCGCCa -3'
miRNA:   3'- -CAugAGCAGCCG------GCGC-AGCU----------AGCGGa -5'
28168 5' -58 NC_005887.1 + 35829 0.7 0.296907
Target:  5'- --cCUCGUgcGCCGCGUCGGcguagaucaUCGCCUg -3'
miRNA:   3'- cauGAGCAgcCGGCGCAGCU---------AGCGGA- -5'
28168 5' -58 NC_005887.1 + 16297 0.71 0.255232
Target:  5'- -cGCUCGcCGGCCgGCGuaUCGAUCGUg- -3'
miRNA:   3'- caUGAGCaGCCGG-CGC--AGCUAGCGga -5'
28168 5' -58 NC_005887.1 + 9545 0.72 0.236256
Target:  5'- -----gGUCGGCCGgGUCGuucGUCGCCa -3'
miRNA:   3'- caugagCAGCCGGCgCAGC---UAGCGGa -5'
28168 5' -58 NC_005887.1 + 15001 0.72 0.236256
Target:  5'- cGUACggcagCGcgCGGCgUGCGUCGAUCGCg- -3'
miRNA:   3'- -CAUGa----GCa-GCCG-GCGCAGCUAGCGga -5'
28168 5' -58 NC_005887.1 + 37175 0.73 0.181408
Target:  5'- ----gCGaCGGCCGCG-CGAUCGCCg -3'
miRNA:   3'- caugaGCaGCCGGCGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 40830 0.73 0.175642
Target:  5'- -gGCUCGgCGGCgCGCGgcgcgccaacggCGAUCGCCUc -3'
miRNA:   3'- caUGAGCaGCCG-GCGCa-----------GCUAGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.