Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28168 | 5' | -58 | NC_005887.1 | + | 14536 | 0.75 | 0.150018 |
Target: 5'- -gGC-CGUCGGCggCGCGUCGAUCGgCa -3' miRNA: 3'- caUGaGCAGCCG--GCGCAGCUAGCgGa -5' |
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28168 | 5' | -58 | NC_005887.1 | + | 27323 | 0.75 | 0.13814 |
Target: 5'- -cACUCGUcCGGCCaCGUCGAcugCGCCa -3' miRNA: 3'- caUGAGCA-GCCGGcGCAGCUa--GCGGa -5' |
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28168 | 5' | -58 | NC_005887.1 | + | 29425 | 0.75 | 0.13814 |
Target: 5'- -aGCUCGUCGGCCGaguaGUCGucggCGUCa -3' miRNA: 3'- caUGAGCAGCCGGCg---CAGCua--GCGGa -5' |
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28168 | 5' | -58 | NC_005887.1 | + | 27206 | 0.76 | 0.120249 |
Target: 5'- -gGC-CGuUCGGCCGCGU-GAUCGCCg -3' miRNA: 3'- caUGaGC-AGCCGGCGCAgCUAGCGGa -5' |
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28168 | 5' | -58 | NC_005887.1 | + | 31266 | 1.07 | 0.000624 |
Target: 5'- aGUACUCGUCGGCCGCGUCGAUCGCCUc -3' miRNA: 3'- -CAUGAGCAGCCGGCGCAGCUAGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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