miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2817 5' -62.9 NC_001491.2 + 118373 0.7 0.372749
Target:  5'- uCGCCcucgGccGCCGGCAGCgGCGGuccuccuACCCCGg -3'
miRNA:   3'- -GCGG----CuaCGGUCGUCG-CGCC-------UGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 118627 0.68 0.445677
Target:  5'- aCGCCaugGCCAGcCAGCGCagcgacuucgccccGGACCUCu -3'
miRNA:   3'- -GCGGcuaCGGUC-GUCGCG--------------CCUGGGGu -5'
2817 5' -62.9 NC_001491.2 + 123455 0.66 0.608048
Target:  5'- cCGCC-AUGUUgAGUAGCGCGG-CCCa- -3'
miRNA:   3'- -GCGGcUACGG-UCGUCGCGCCuGGGgu -5'
2817 5' -62.9 NC_001491.2 + 124717 1.08 0.000768
Target:  5'- cCGCCGAUGCCAGCAGCGCGGACCCCAg -3'
miRNA:   3'- -GCGGCUACGGUCGUCGCGCCUGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 137621 0.72 0.256929
Target:  5'- gGCCGccGCC-GCGGCaGCGGccGCCCCGg -3'
miRNA:   3'- gCGGCuaCGGuCGUCG-CGCC--UGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 137747 0.66 0.578732
Target:  5'- cCGCCcg-GCgGGCGGCgggcgcccGCGGGuCCCCGg -3'
miRNA:   3'- -GCGGcuaCGgUCGUCG--------CGCCU-GGGGU- -5'
2817 5' -62.9 NC_001491.2 + 140130 0.67 0.502494
Target:  5'- gCGCCG-UGUCGGCGGaggcaGCGGacgcGCUCCGg -3'
miRNA:   3'- -GCGGCuACGGUCGUCg----CGCC----UGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 144848 0.69 0.389404
Target:  5'- cCGCCGcUGCCGGCGGCcgaGGGCgaCCGc -3'
miRNA:   3'- -GCGGCuACGGUCGUCGcg-CCUGg-GGU- -5'
2817 5' -62.9 NC_001491.2 + 144891 0.68 0.466019
Target:  5'- uGCCGGggacGCCGGCuGgGCGGcaGCCgCCGg -3'
miRNA:   3'- gCGGCUa---CGGUCGuCgCGCC--UGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 145088 0.68 0.443061
Target:  5'- cCGcCCGGggagGCCgaggauggaaacucgGGCuGCGgGGACCCCGg -3'
miRNA:   3'- -GC-GGCUa---CGG---------------UCGuCGCgCCUGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 145375 0.67 0.502494
Target:  5'- gCGCCGGaG-CGGCAGCucuucggggugGCGG-CCCCAg -3'
miRNA:   3'- -GCGGCUaCgGUCGUCG-----------CGCCuGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 146503 0.67 0.511809
Target:  5'- gGCCGcgGCCgcGGCAGCcuugcguCGGGgCCCGa -3'
miRNA:   3'- gCGGCuaCGG--UCGUCGc------GCCUgGGGU- -5'
2817 5' -62.9 NC_001491.2 + 147744 0.67 0.521195
Target:  5'- gGCCGGgggGCC-GCuGCaGCGGGCCgCGa -3'
miRNA:   3'- gCGGCUa--CGGuCGuCG-CGCCUGGgGU- -5'
2817 5' -62.9 NC_001491.2 + 147972 0.66 0.578732
Target:  5'- gGCC---GCCAGCAGCGCcGAgaguCCCCc -3'
miRNA:   3'- gCGGcuaCGGUCGUCGCGcCU----GGGGu -5'
2817 5' -62.9 NC_001491.2 + 148102 0.68 0.484092
Target:  5'- aGCCGGUgaagGCCAGguccccggucgaCAGCaGCaGGACCCCc -3'
miRNA:   3'- gCGGCUA----CGGUC------------GUCG-CG-CCUGGGGu -5'
2817 5' -62.9 NC_001491.2 + 148787 0.66 0.569022
Target:  5'- cCGCgGG-GCuCGGCGGCGgGGAgCCUCGg -3'
miRNA:   3'- -GCGgCUaCG-GUCGUCGCgCCU-GGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.