miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2817 5' -62.9 NC_001491.2 + 13927 0.67 0.530647
Target:  5'- gCGCCGggGCUGGCGGCcuuggGCGGuggcaGCgCCAg -3'
miRNA:   3'- -GCGGCuaCGGUCGUCG-----CGCC-----UGgGGU- -5'
2817 5' -62.9 NC_001491.2 + 17669 0.67 0.549731
Target:  5'- gGCCGccGUa--CAGCGCGG-CCCCGg -3'
miRNA:   3'- gCGGCuaCGgucGUCGCGCCuGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 31900 0.68 0.448303
Target:  5'- aGUCGGUGUgAGC--CGCGGugCCCGc -3'
miRNA:   3'- gCGGCUACGgUCGucGCGCCugGGGU- -5'
2817 5' -62.9 NC_001491.2 + 45098 0.69 0.430965
Target:  5'- gGCCGggGCC-GCGGCGgGGGuCUCUAc -3'
miRNA:   3'- gCGGCuaCGGuCGUCGCgCCU-GGGGU- -5'
2817 5' -62.9 NC_001491.2 + 45131 0.76 0.152103
Target:  5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3'
miRNA:   3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 45164 0.76 0.152103
Target:  5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3'
miRNA:   3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 45197 0.76 0.152103
Target:  5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3'
miRNA:   3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 45230 0.76 0.152103
Target:  5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3'
miRNA:   3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 45263 0.76 0.152103
Target:  5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3'
miRNA:   3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 49475 0.76 0.1555
Target:  5'- cCGCCGggGCCGucccggacgcggcGCAGCGgGGAaCCCCGc -3'
miRNA:   3'- -GCGGCuaCGGU-------------CGUCGCgCCU-GGGGU- -5'
2817 5' -62.9 NC_001491.2 + 58071 0.69 0.397505
Target:  5'- uGUCGAUGCCGGgGGgGUGu-CCCCGg -3'
miRNA:   3'- gCGGCUACGGUCgUCgCGCcuGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 58822 0.68 0.466019
Target:  5'- gGCCaGGUGCU-GC-GUGCGGGCuCCCAa -3'
miRNA:   3'- gCGG-CUACGGuCGuCGCGCCUG-GGGU- -5'
2817 5' -62.9 NC_001491.2 + 65485 0.67 0.549731
Target:  5'- gCGCCacaGGUGCCAGC--CGgGGaaGCCCCGg -3'
miRNA:   3'- -GCGG---CUACGGUCGucGCgCC--UGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 66926 0.68 0.484092
Target:  5'- aGCUGGgugcgguuuuaGCCA-CGGCuGCGGGCCCCGa -3'
miRNA:   3'- gCGGCUa----------CGGUcGUCG-CGCCUGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 97218 0.67 0.502494
Target:  5'- gCGCCugaaGAUGCCcugGGUGGUGCGGAUCUg- -3'
miRNA:   3'- -GCGG----CUACGG---UCGUCGCGCCUGGGgu -5'
2817 5' -62.9 NC_001491.2 + 106255 0.69 0.405713
Target:  5'- aCGCCGggGCgGGUGGCGaCGGACagcuggCCCu -3'
miRNA:   3'- -GCGGCuaCGgUCGUCGC-GCCUG------GGGu -5'
2817 5' -62.9 NC_001491.2 + 112981 0.69 0.397505
Target:  5'- gGCUGGggggGCCAgGCucucucucgGGCGCGGGCCCg- -3'
miRNA:   3'- gCGGCUa---CGGU-CG---------UCGCGCCUGGGgu -5'
2817 5' -62.9 NC_001491.2 + 114957 0.67 0.521195
Target:  5'- cCGCgGGUcGCCuGCGccguGCGCuGGCCCCGg -3'
miRNA:   3'- -GCGgCUA-CGGuCGU----CGCGcCUGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 116708 0.66 0.608048
Target:  5'- uGCCGcgGCC-GCGGcCGCuccggggaccaGGGCgCCCAg -3'
miRNA:   3'- gCGGCuaCGGuCGUC-GCG-----------CCUG-GGGU- -5'
2817 5' -62.9 NC_001491.2 + 116810 0.72 0.280767
Target:  5'- uGCCGcgGCCAGCcagcaacAGCcCGaGGCCCCGg -3'
miRNA:   3'- gCGGCuaCGGUCG-------UCGcGC-CUGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.