Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2817 | 5' | -62.9 | NC_001491.2 | + | 124717 | 1.08 | 0.000768 |
Target: 5'- cCGCCGAUGCCAGCAGCGCGGACCCCAg -3' miRNA: 3'- -GCGGCUACGGUCGUCGCGCCUGGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 45164 | 0.76 | 0.152103 |
Target: 5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3' miRNA: 3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 45230 | 0.76 | 0.152103 |
Target: 5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3' miRNA: 3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 45197 | 0.76 | 0.152103 |
Target: 5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3' miRNA: 3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 45131 | 0.76 | 0.152103 |
Target: 5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3' miRNA: 3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 45263 | 0.76 | 0.152103 |
Target: 5'- gGCCGggGCC-GCGGCGgGGGCCgCCGc -3' miRNA: 3'- gCGGCuaCGGuCGUCGCgCCUGG-GGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 49475 | 0.76 | 0.1555 |
Target: 5'- cCGCCGggGCCGucccggacgcggcGCAGCGgGGAaCCCCGc -3' miRNA: 3'- -GCGGCuaCGGU-------------CGUCGCgCCU-GGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 137621 | 0.72 | 0.256929 |
Target: 5'- gGCCGccGCC-GCGGCaGCGGccGCCCCGg -3' miRNA: 3'- gCGGCuaCGGuCGUCG-CGCC--UGGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 116810 | 0.72 | 0.280767 |
Target: 5'- uGCCGcgGCCAGCcagcaacAGCcCGaGGCCCCGg -3' miRNA: 3'- gCGGCuaCGGUCG-------UCGcGC-CUGGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 118373 | 0.7 | 0.372749 |
Target: 5'- uCGCCcucgGccGCCGGCAGCgGCGGuccuccuACCCCGg -3' miRNA: 3'- -GCGG----CuaCGGUCGUCG-CGCC-------UGGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 144848 | 0.69 | 0.389404 |
Target: 5'- cCGCCGcUGCCGGCGGCcgaGGGCgaCCGc -3' miRNA: 3'- -GCGGCuACGGUCGUCGcg-CCUGg-GGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 58071 | 0.69 | 0.397505 |
Target: 5'- uGUCGAUGCCGGgGGgGUGu-CCCCGg -3' miRNA: 3'- gCGGCUACGGUCgUCgCGCcuGGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 112981 | 0.69 | 0.397505 |
Target: 5'- gGCUGGggggGCCAgGCucucucucgGGCGCGGGCCCg- -3' miRNA: 3'- gCGGCUa---CGGU-CG---------UCGCGCCUGGGgu -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 106255 | 0.69 | 0.405713 |
Target: 5'- aCGCCGggGCgGGUGGCGaCGGACagcuggCCCu -3' miRNA: 3'- -GCGGCuaCGgUCGUCGC-GCCUG------GGGu -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 45098 | 0.69 | 0.430965 |
Target: 5'- gGCCGggGCC-GCGGCGgGGGuCUCUAc -3' miRNA: 3'- gCGGCuaCGGuCGUCGCgCCU-GGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 145088 | 0.68 | 0.443061 |
Target: 5'- cCGcCCGGggagGCCgaggauggaaacucgGGCuGCGgGGACCCCGg -3' miRNA: 3'- -GC-GGCUa---CGG---------------UCGuCGCgCCUGGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 118627 | 0.68 | 0.445677 |
Target: 5'- aCGCCaugGCCAGcCAGCGCagcgacuucgccccGGACCUCu -3' miRNA: 3'- -GCGGcuaCGGUC-GUCGCG--------------CCUGGGGu -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 31900 | 0.68 | 0.448303 |
Target: 5'- aGUCGGUGUgAGC--CGCGGugCCCGc -3' miRNA: 3'- gCGGCUACGgUCGucGCGCCugGGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 58822 | 0.68 | 0.466019 |
Target: 5'- gGCCaGGUGCU-GC-GUGCGGGCuCCCAa -3' miRNA: 3'- gCGG-CUACGGuCGuCGCGCCUG-GGGU- -5' |
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2817 | 5' | -62.9 | NC_001491.2 | + | 144891 | 0.68 | 0.466019 |
Target: 5'- uGCCGGggacGCCGGCuGgGCGGcaGCCgCCGg -3' miRNA: 3'- gCGGCUa---CGGUCGuCgCGCC--UGG-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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