miRNA display CGI


Results 41 - 60 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 31647 1.14 0.000192
Target:  5'- gGCAGAGCAGCCAGUCAGCAUCGCGCCa -3'
miRNA:   3'- -CGUCUCGUCGGUCAGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29433 0.72 0.253772
Target:  5'- gGCcGAGUAGUC-GUCGGCGUCagGCGCUu -3'
miRNA:   3'- -CGuCUCGUCGGuCAGUCGUAG--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15648 0.71 0.260485
Target:  5'- uCAGGGC-GCCGuGUC-GCAgaugCGCGCCg -3'
miRNA:   3'- cGUCUCGuCGGU-CAGuCGUa---GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37327 0.68 0.406426
Target:  5'- cGCAGcAGC-GCCGGcacUGGCAUCGguCGCCg -3'
miRNA:   3'- -CGUC-UCGuCGGUCa--GUCGUAGC--GCGG- -5'
28170 5' -56.8 NC_005887.1 + 37095 0.68 0.397082
Target:  5'- aGCGG-GCgAGCaCAGccUCGGCgAUCGCGCg -3'
miRNA:   3'- -CGUCuCG-UCG-GUC--AGUCG-UAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 12183 0.68 0.397082
Target:  5'- uGCAGAacauGCAGaCCgcgaaGGaCAGCGcCGCGCCg -3'
miRNA:   3'- -CGUCU----CGUC-GG-----UCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 12117 0.69 0.378814
Target:  5'- cGCAGaAGC-GCCAGgacgAGCAggccgccgucgCGCGCCa -3'
miRNA:   3'- -CGUC-UCGuCGGUCag--UCGUa----------GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37281 0.69 0.344007
Target:  5'- --cGGG-AGUCGGUgCAGuCGUCGCGCCa -3'
miRNA:   3'- cguCUCgUCGGUCA-GUC-GUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29701 0.7 0.327486
Target:  5'- uGCAcGcGCAGCCAcUCGcCGUCGCGUCg -3'
miRNA:   3'- -CGU-CuCGUCGGUcAGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 42150 0.7 0.318653
Target:  5'- cGCAGAGCAGCgGGgcgaaCuGCGauuuauugcgaauUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGgUCa----GuCGU-------------AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 16483 0.7 0.317067
Target:  5'- gGCAGgauccGGCGGgCUGGUCGGCGaugucgcaggccgaUCGCGUCg -3'
miRNA:   3'- -CGUC-----UCGUC-GGUCAGUCGU--------------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 23401 0.7 0.303821
Target:  5'- cGCuG-GCAGCCuG-CAGCAgCGCGUCg -3'
miRNA:   3'- -CGuCuCGUCGGuCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 34693 0.7 0.29623
Target:  5'- aGCAGcAGCGGgCGGcCGuCGUCGCGCUu -3'
miRNA:   3'- -CGUC-UCGUCgGUCaGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 7575 0.71 0.281492
Target:  5'- gGCAGGcGUAuCCGGaCGGCAUCGCGUa -3'
miRNA:   3'- -CGUCU-CGUcGGUCaGUCGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 28300 0.71 0.26527
Target:  5'- cGCAGcgucguGGCgacuuguugcuggaAGCCuguuGUCGGCGUCuGCGCCg -3'
miRNA:   3'- -CGUC------UCG--------------UCGGu---CAGUCGUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27356 0.66 0.539034
Target:  5'- -gGGAGCA-CCuGUcCGGCAuggaagUCGUGCCg -3'
miRNA:   3'- cgUCUCGUcGGuCA-GUCGU------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 36248 0.66 0.539034
Target:  5'- gGCAcGGUgaucCCGGUCGGCAcggugaCGCGCCg -3'
miRNA:   3'- -CGUcUCGuc--GGUCAGUCGUa-----GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 41369 0.66 0.549924
Target:  5'- uGCGGuGUuccuuGCCcGgcggCAGCAgCGCGCCc -3'
miRNA:   3'- -CGUCuCGu----CGGuCa---GUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 17815 0.66 0.56088
Target:  5'- --cGGGC-GCCA-UCAGCcgCGCgGCCg -3'
miRNA:   3'- cguCUCGuCGGUcAGUCGuaGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 27685 0.78 0.090403
Target:  5'- uGCGGGGCAGCgucgaaccggcgaCGGgCAGCAcCGCGCCg -3'
miRNA:   3'- -CGUCUCGUCG-------------GUCaGUCGUaGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.