miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 18496 0.68 0.415908
Target:  5'- -gAGAucGC-GCCGaUCAGCGUCGUGCUg -3'
miRNA:   3'- cgUCU--CGuCGGUcAGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 18717 0.67 0.496289
Target:  5'- cGCGcAGCGGCUGGaaCAGCGUCGacagcagcgggcCGCCg -3'
miRNA:   3'- -CGUcUCGUCGGUCa-GUCGUAGC------------GCGG- -5'
28170 5' -56.8 NC_005887.1 + 18805 0.7 0.29623
Target:  5'- uGCGG-GCGGC--GUCAGCGUaCGCuGCCa -3'
miRNA:   3'- -CGUCuCGUCGguCAGUCGUA-GCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 19204 0.66 0.549923
Target:  5'- aCAG-GCGGCgCGGUUacgacgAGCGUCGUGUa -3'
miRNA:   3'- cGUCuCGUCG-GUCAG------UCGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 19349 0.71 0.288787
Target:  5'- cGCAGaAGCGaCCGGcgucgaUCAGCGgcaaCGCGCCa -3'
miRNA:   3'- -CGUC-UCGUcGGUC------AGUCGUa---GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 19816 0.68 0.415908
Target:  5'- gGCAG-GUAGagcGaCAGCGUCGUGCCg -3'
miRNA:   3'- -CGUCuCGUCgguCaGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 20818 0.73 0.201783
Target:  5'- uGCAGcgucgugaauuucccGGCAGCCGG-CGuCGUUGCGCCg -3'
miRNA:   3'- -CGUC---------------UCGUCGGUCaGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 21873 0.66 0.517485
Target:  5'- cGCAcAGCAGCUcaUCAGCAcguggccCGCGCg -3'
miRNA:   3'- -CGUcUCGUCGGucAGUCGUa------GCGCGg -5'
28170 5' -56.8 NC_005887.1 + 22863 0.68 0.397083
Target:  5'- cGUAGcucgugaacaacAGCGGCCGcGcCGGCGUCGaGCCa -3'
miRNA:   3'- -CGUC------------UCGUCGGU-CaGUCGUAGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 23401 0.7 0.303821
Target:  5'- cGCuG-GCAGCCuG-CAGCAgCGCGUCg -3'
miRNA:   3'- -CGuCuCGUCGGuCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 23440 0.68 0.435269
Target:  5'- aGCGcGAGCAGCaaa--AGCAUCugcgaGCGCCg -3'
miRNA:   3'- -CGU-CUCGUCGgucagUCGUAG-----CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 24193 0.7 0.319449
Target:  5'- uGCcGAGCAGCUucggcacgacGUCGGCGgccCGCGCUu -3'
miRNA:   3'- -CGuCUCGUCGGu---------CAGUCGUa--GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 24913 0.67 0.496289
Target:  5'- cGC--AGCAGCCGGaUCGGCAccguugucgaUCGCGaCg -3'
miRNA:   3'- -CGucUCGUCGGUC-AGUCGU----------AGCGCgG- -5'
28170 5' -56.8 NC_005887.1 + 24991 0.74 0.174075
Target:  5'- uCGGGGUAguuGCCGagcGUCAGC-UCGCGCCg -3'
miRNA:   3'- cGUCUCGU---CGGU---CAGUCGuAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27356 0.66 0.539034
Target:  5'- -gGGAGCA-CCuGUcCGGCAuggaagUCGUGCCg -3'
miRNA:   3'- cgUCUCGUcGGuCA-GUCGU------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27586 0.73 0.199606
Target:  5'- aGCGcGAGCGcGCC-GUCgAGCGUCGUGUCg -3'
miRNA:   3'- -CGU-CUCGU-CGGuCAG-UCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27685 0.78 0.090403
Target:  5'- uGCGGGGCAGCgucgaaccggcgaCGGgCAGCAcCGCGCCg -3'
miRNA:   3'- -CGUCUCGUCG-------------GUCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 28300 0.71 0.26527
Target:  5'- cGCAGcgucguGGCgacuuguugcuggaAGCCuguuGUCGGCGUCuGCGCCg -3'
miRNA:   3'- -CGUC------UCG--------------UCGGu---CAGUCGUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29433 0.72 0.253772
Target:  5'- gGCcGAGUAGUC-GUCGGCGUCagGCGCUu -3'
miRNA:   3'- -CGuCUCGUCGGuCAGUCGUAG--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29701 0.7 0.327486
Target:  5'- uGCAcGcGCAGCCAcUCGcCGUCGCGUCg -3'
miRNA:   3'- -CGU-CuCGUCGGUcAGUcGUAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.