miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 11388 0.68 0.425522
Target:  5'- cGCAGccggagcgcuGGCGGCCGGcgccgccaaGGCAUCgucugaGCGCCa -3'
miRNA:   3'- -CGUC----------UCGUCGGUCag-------UCGUAG------CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 12064 0.66 0.56088
Target:  5'- cGCGcuGCAGCaGGUCGGCA-CGuCGCUc -3'
miRNA:   3'- -CGUcuCGUCGgUCAGUCGUaGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 12117 0.69 0.378814
Target:  5'- cGCAGaAGC-GCCAGgacgAGCAggccgccgucgCGCGCCa -3'
miRNA:   3'- -CGUC-UCGuCGGUCag--UCGUa----------GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 12183 0.68 0.397082
Target:  5'- uGCAGAacauGCAGaCCgcgaaGGaCAGCGcCGCGCCg -3'
miRNA:   3'- -CGUCU----CGUC-GG-----UCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 12699 0.66 0.543381
Target:  5'- uGCAGGgucacgcgcGCAcGCUGGUCgcgcAGCAgcagaaugcgcucgaUCGCGCCg -3'
miRNA:   3'- -CGUCU---------CGU-CGGUCAG----UCGU---------------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 13028 0.67 0.455141
Target:  5'- aGCAgcucGAGCAGauccacaCGGcCAGCGUCGcCGCg -3'
miRNA:   3'- -CGU----CUCGUCg------GUCaGUCGUAGC-GCGg -5'
28170 5' -56.8 NC_005887.1 + 13109 0.66 0.517485
Target:  5'- uGCAGGGCGuGCCgaaGGUCGaCAccucgagCGUGCCg -3'
miRNA:   3'- -CGUCUCGU-CGG---UCAGUcGUa------GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 13302 0.68 0.435269
Target:  5'- cCAGAuCGGCCAGgcguUCGGCAaCGCcgGCCg -3'
miRNA:   3'- cGUCUcGUCGGUC----AGUCGUaGCG--CGG- -5'
28170 5' -56.8 NC_005887.1 + 14527 0.8 0.067723
Target:  5'- uGCAGGcGCGGCC-GUCGGCggCGCGUCg -3'
miRNA:   3'- -CGUCU-CGUCGGuCAGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 14704 0.73 0.205088
Target:  5'- cGCGGcgGGCgGGCCGGgcgCGGCgAUCGCGCa -3'
miRNA:   3'- -CGUC--UCG-UCGGUCa--GUCG-UAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 14910 0.68 0.439203
Target:  5'- uGCGGuguGCAcGCCcGcgaacgugcccgccaUCAGCGUCGCgGCCg -3'
miRNA:   3'- -CGUCu--CGU-CGGuC---------------AGUCGUAGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 15254 0.66 0.517485
Target:  5'- aGCAG-GCAGCCgcAGUgCugcgcggcgAGCGUC-CGCCg -3'
miRNA:   3'- -CGUCuCGUCGG--UCA-G---------UCGUAGcGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15648 0.71 0.260485
Target:  5'- uCAGGGC-GCCGuGUC-GCAgaugCGCGCCg -3'
miRNA:   3'- cGUCUCGuCGGU-CAGuCGUa---GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15875 0.66 0.56088
Target:  5'- aGCAGGcGCA-CCAG-CAGCucggUGCGCUc -3'
miRNA:   3'- -CGUCU-CGUcGGUCaGUCGua--GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15974 0.66 0.50684
Target:  5'- cGCGGAacGCAgGUCGGcCAGCugCGCGUCg -3'
miRNA:   3'- -CGUCU--CGU-CGGUCaGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 16483 0.7 0.317067
Target:  5'- gGCAGgauccGGCGGgCUGGUCGGCGaugucgcaggccgaUCGCGUCg -3'
miRNA:   3'- -CGUC-----UCGUC-GGUCAGUCGU--------------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 16538 0.68 0.435269
Target:  5'- cGCcGAGUGGgCGcGUCAGCAacUCGUGCa -3'
miRNA:   3'- -CGuCUCGUCgGU-CAGUCGU--AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 17144 0.66 0.549923
Target:  5'- cGCA-AGguGCUGGUCGGCGaagaUCGCGa- -3'
miRNA:   3'- -CGUcUCguCGGUCAGUCGU----AGCGCgg -5'
28170 5' -56.8 NC_005887.1 + 17183 0.67 0.455141
Target:  5'- cGCGcGAacGCGGCCGcacgCGGCAaugUUGCGCCg -3'
miRNA:   3'- -CGU-CU--CGUCGGUca--GUCGU---AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 17815 0.66 0.56088
Target:  5'- --cGGGC-GCCA-UCAGCcgCGCgGCCg -3'
miRNA:   3'- cguCUCGuCGGUcAGUCGuaGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.