miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 34442 0.67 0.471386
Target:  5'- cCGGAGCGGUCgccucgaAGUCgucuucguucgcgcGGC-UCGCGCCc -3'
miRNA:   3'- cGUCUCGUCGG-------UCAG--------------UCGuAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 34000 0.67 0.475494
Target:  5'- cGCcGAGC-GCC-GUCGGCAggUCGaCGUCg -3'
miRNA:   3'- -CGuCUCGuCGGuCAGUCGU--AGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 33790 0.69 0.352489
Target:  5'- uGCGGuGCuGCCu-UCGGCAU-GCGCCc -3'
miRNA:   3'- -CGUCuCGuCGGucAGUCGUAgCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32768 0.72 0.240139
Target:  5'- cGCGccauGCAGCCGGcucgugcgcaggaUCGGCG-CGCGCCg -3'
miRNA:   3'- -CGUcu--CGUCGGUC-------------AGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32733 0.73 0.199606
Target:  5'- gGCGGGGUAGCgCGGcgCucGCGUgCGCGCCg -3'
miRNA:   3'- -CGUCUCGUCG-GUCa-Gu-CGUA-GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32710 0.69 0.387878
Target:  5'- cGguGAGCuGCacaCGGUCGaucaCAUCGUGCCg -3'
miRNA:   3'- -CguCUCGuCG---GUCAGUc---GUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32420 0.71 0.267342
Target:  5'- cGCAGcuuGCGGCCGGccuUCuGCAcgaacaugaUCGUGCCg -3'
miRNA:   3'- -CGUCu--CGUCGGUC---AGuCGU---------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32290 0.68 0.435269
Target:  5'- aCGGGGCGaucGUCGGgcCAGCcggCGCGCCg -3'
miRNA:   3'- cGUCUCGU---CGGUCa-GUCGua-GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 31857 0.73 0.199606
Target:  5'- uGCAcGAucgauGCGGaCCAGUCgAGCGugaUCGCGCCg -3'
miRNA:   3'- -CGU-CU-----CGUC-GGUCAG-UCGU---AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 31647 1.14 0.000192
Target:  5'- gGCAGAGCAGCCAGUCAGCAUCGCGCCa -3'
miRNA:   3'- -CGUCUCGUCGGUCAGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 31119 0.72 0.228335
Target:  5'- cGCAGAGCAgggcgagcuuGCCGGgcaGGCcgUGCGCa -3'
miRNA:   3'- -CGUCUCGU----------CGGUCag-UCGuaGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 31050 0.75 0.147311
Target:  5'- uGCAGAaCAGCUGGaUCAGCugCGCGCCu -3'
miRNA:   3'- -CGUCUcGUCGGUC-AGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 30908 0.66 0.56088
Target:  5'- --cGGGUAGuuCCAGcgCGGCAUCGCcuuguGCCa -3'
miRNA:   3'- cguCUCGUC--GGUCa-GUCGUAGCG-----CGG- -5'
28170 5' -56.8 NC_005887.1 + 30708 0.68 0.435269
Target:  5'- aGCAGGuGC-GCgAG-CAGCuuGUCGCGCUg -3'
miRNA:   3'- -CGUCU-CGuCGgUCaGUCG--UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 30528 0.67 0.445143
Target:  5'- cGUAG-GCGGCC-GUCGGCcgaGaCGCCa -3'
miRNA:   3'- -CGUCuCGUCGGuCAGUCGuagC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 29780 0.69 0.378815
Target:  5'- gGCGGAcaccaugcGCAuGCCGG-CGGcCGUCGaCGCCa -3'
miRNA:   3'- -CGUCU--------CGU-CGGUCaGUC-GUAGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 29745 0.68 0.425523
Target:  5'- uGCAGcugccaAGCAagcGCCAGcUguGCuaccUCGCGCCg -3'
miRNA:   3'- -CGUC------UCGU---CGGUC-AguCGu---AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29701 0.7 0.327486
Target:  5'- uGCAcGcGCAGCCAcUCGcCGUCGCGUCg -3'
miRNA:   3'- -CGU-CuCGUCGGUcAGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29433 0.72 0.253772
Target:  5'- gGCcGAGUAGUC-GUCGGCGUCagGCGCUu -3'
miRNA:   3'- -CGuCUCGUCGGuCAGUCGUAG--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 28300 0.71 0.26527
Target:  5'- cGCAGcgucguGGCgacuuguugcuggaAGCCuguuGUCGGCGUCuGCGCCg -3'
miRNA:   3'- -CGUC------UCG--------------UCGGu---CAGUCGUAG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.