miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 42150 0.7 0.318653
Target:  5'- cGCAGAGCAGCgGGgcgaaCuGCGauuuauugcgaauUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGgUCa----GuCGU-------------AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 41998 0.67 0.46526
Target:  5'- cGCcGGGCAGCuCAGcugcgagccgcUCAGCA-CGUGCg -3'
miRNA:   3'- -CGuCUCGUCG-GUC-----------AGUCGUaGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 41683 0.69 0.378815
Target:  5'- aGCAGcAGCAcCUGGUCGGCGgucaugCGCGUg -3'
miRNA:   3'- -CGUC-UCGUcGGUCAGUCGUa-----GCGCGg -5'
28170 5' -56.8 NC_005887.1 + 41369 0.66 0.549924
Target:  5'- uGCGGuGUuccuuGCCcGgcggCAGCAgCGCGCCc -3'
miRNA:   3'- -CGUCuCGu----CGGuCa---GUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 41359 0.69 0.36901
Target:  5'- cGCAcGGCGGCCGgcaauuugcgcguGUCGGCGaucaccUCGUGCUg -3'
miRNA:   3'- -CGUcUCGUCGGU-------------CAGUCGU------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 40869 0.71 0.288787
Target:  5'- cGCGcGAGC-GCCGcacgccGUCGGCGUCGgGCUc -3'
miRNA:   3'- -CGU-CUCGuCGGU------CAGUCGUAGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 40781 0.66 0.539034
Target:  5'- cGCcGAGCcGgCGGUCgagguucguggcGGCGaCGCGCCg -3'
miRNA:   3'- -CGuCUCGuCgGUCAG------------UCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 40608 0.67 0.454136
Target:  5'- uGCGcGAGC-GCCAgaccgucGUCGcuGCcgCGCGCCg -3'
miRNA:   3'- -CGU-CUCGuCGGU-------CAGU--CGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 40534 0.67 0.465259
Target:  5'- cGCGcGGCAGCgacgaCGGUCuGGCGcUCGCGCa -3'
miRNA:   3'- -CGUcUCGUCG-----GUCAG-UCGU-AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 39915 0.66 0.514283
Target:  5'- cGguGAGCGGUCgauugaugugcgacGG-CGGCccGUCGCGCUu -3'
miRNA:   3'- -CguCUCGUCGG--------------UCaGUCG--UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 39855 0.7 0.338989
Target:  5'- uGCAcGAGCAgGCCGGgcucgccgucgaugaUCcGCGUCaGCGCCu -3'
miRNA:   3'- -CGU-CUCGU-CGGUC---------------AGuCGUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 39268 0.71 0.274344
Target:  5'- ----uGCGGCCguGGUCGGCGUUcaGCGCCu -3'
miRNA:   3'- cgucuCGUCGG--UCAGUCGUAG--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37998 0.67 0.455141
Target:  5'- aGCAGAGCgcaucgucuugGGCCAG-UAGC-UUGCuacGCCa -3'
miRNA:   3'- -CGUCUCG-----------UCGGUCaGUCGuAGCG---CGG- -5'
28170 5' -56.8 NC_005887.1 + 37488 0.67 0.485838
Target:  5'- uCAGGGCGG-CGGUCAGUuccuugAUCGcCGCa -3'
miRNA:   3'- cGUCUCGUCgGUCAGUCG------UAGC-GCGg -5'
28170 5' -56.8 NC_005887.1 + 37327 0.68 0.406426
Target:  5'- cGCAGcAGC-GCCGGcacUGGCAUCGguCGCCg -3'
miRNA:   3'- -CGUC-UCGuCGGUCa--GUCGUAGC--GCGG- -5'
28170 5' -56.8 NC_005887.1 + 37281 0.69 0.344007
Target:  5'- --cGGG-AGUCGGUgCAGuCGUCGCGCCa -3'
miRNA:   3'- cguCUCgUCGGUCA-GUC-GUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37095 0.68 0.397082
Target:  5'- aGCGG-GCgAGCaCAGccUCGGCgAUCGCGCg -3'
miRNA:   3'- -CGUCuCG-UCG-GUC--AGUCG-UAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 36248 0.66 0.539034
Target:  5'- gGCAcGGUgaucCCGGUCGGCAcggugaCGCGCCg -3'
miRNA:   3'- -CGUcUCGuc--GGUCAGUCGUa-----GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 35991 0.68 0.435269
Target:  5'- cGCcGuGUGGCCGGaCGGC--CGCGCCg -3'
miRNA:   3'- -CGuCuCGUCGGUCaGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 34693 0.7 0.29623
Target:  5'- aGCAGcAGCGGgCGGcCGuCGUCGCGCUu -3'
miRNA:   3'- -CGUC-UCGUCgGUCaGUcGUAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.