miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 29701 0.7 0.327486
Target:  5'- uGCAcGcGCAGCCAcUCGcCGUCGCGUCg -3'
miRNA:   3'- -CGU-CuCGUCGGUcAGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29433 0.72 0.253772
Target:  5'- gGCcGAGUAGUC-GUCGGCGUCagGCGCUu -3'
miRNA:   3'- -CGuCUCGUCGGuCAGUCGUAG--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15648 0.71 0.260485
Target:  5'- uCAGGGC-GCCGuGUC-GCAgaugCGCGCCg -3'
miRNA:   3'- cGUCUCGuCGGU-CAGuCGUa---GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 28300 0.71 0.26527
Target:  5'- cGCAGcgucguGGCgacuuguugcuggaAGCCuguuGUCGGCGUCuGCGCCg -3'
miRNA:   3'- -CGUC------UCG--------------UCGGu---CAGUCGUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 7575 0.71 0.281492
Target:  5'- gGCAGGcGUAuCCGGaCGGCAUCGCGUa -3'
miRNA:   3'- -CGUCU-CGUcGGUCaGUCGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 34693 0.7 0.29623
Target:  5'- aGCAGcAGCGGgCGGcCGuCGUCGCGCUu -3'
miRNA:   3'- -CGUC-UCGUCgGUCaGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 23401 0.7 0.303821
Target:  5'- cGCuG-GCAGCCuG-CAGCAgCGCGUCg -3'
miRNA:   3'- -CGuCuCGUCGGuCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 16483 0.7 0.317067
Target:  5'- gGCAGgauccGGCGGgCUGGUCGGCGaugucgcaggccgaUCGCGUCg -3'
miRNA:   3'- -CGUC-----UCGUC-GGUCAGUCGU--------------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 42150 0.7 0.318653
Target:  5'- cGCAGAGCAGCgGGgcgaaCuGCGauuuauugcgaauUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGgUCa----GuCGU-------------AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 32768 0.72 0.240139
Target:  5'- cGCGccauGCAGCCGGcucgugcgcaggaUCGGCG-CGCGCCg -3'
miRNA:   3'- -CGUcu--CGUCGGUC-------------AGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 31119 0.72 0.228335
Target:  5'- cGCAGAGCAgggcgagcuuGCCGGgcaGGCcgUGCGCa -3'
miRNA:   3'- -CGUCUCGU----------CGGUCag-UCGuaGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 14704 0.73 0.205088
Target:  5'- cGCGGcgGGCgGGCCGGgcgCGGCgAUCGCGCa -3'
miRNA:   3'- -CGUC--UCG-UCGGUCa--GUCG-UAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 14527 0.8 0.067723
Target:  5'- uGCAGGcGCGGCC-GUCGGCggCGCGUCg -3'
miRNA:   3'- -CGUCU-CGUCGGuCAGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 9827 0.78 0.088074
Target:  5'- cGCGucGCAGCCGGUCAGCG-CG-GCCa -3'
miRNA:   3'- -CGUcuCGUCGGUCAGUCGUaGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 11304 0.75 0.143233
Target:  5'- cGC--AGCGGCCGGcUCGGCAgcgaGCGCCg -3'
miRNA:   3'- -CGucUCGUCGGUC-AGUCGUag--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 31050 0.75 0.147311
Target:  5'- uGCAGAaCAGCUGGaUCAGCugCGCGCCu -3'
miRNA:   3'- -CGUCUcGUCGGUC-AGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 24991 0.74 0.174075
Target:  5'- uCGGGGUAguuGCCGagcGUCAGC-UCGCGCCg -3'
miRNA:   3'- cGUCUCGU---CGGU---CAGUCGuAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 3419 0.74 0.178937
Target:  5'- gGCAGGGCGGCUuuGUCAcGCAgaugggCGCGaCCu -3'
miRNA:   3'- -CGUCUCGUCGGu-CAGU-CGUa-----GCGC-GG- -5'
28170 5' -56.8 NC_005887.1 + 27586 0.73 0.199606
Target:  5'- aGCGcGAGCGcGCC-GUCgAGCGUCGUGUCg -3'
miRNA:   3'- -CGU-CUCGU-CGGuCAG-UCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32733 0.73 0.199606
Target:  5'- gGCGGGGUAGCgCGGcgCucGCGUgCGCGCCg -3'
miRNA:   3'- -CGUCUCGUCG-GUCa-Gu-CGUA-GCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.