miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 1348 0.66 0.549923
Target:  5'- cGCAGGGCGagacgcucgagcGCUAcauccuGUCccgcGCGUCGCGCUc -3'
miRNA:   3'- -CGUCUCGU------------CGGU------CAGu---CGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 1647 0.67 0.496289
Target:  5'- gGCAcGAGCgucgaAGCCgaaauGGUCuuCAUCGCGCUc -3'
miRNA:   3'- -CGU-CUCG-----UCGG-----UCAGucGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 1688 0.74 0.178937
Target:  5'- uGCAGGaugguGCGGCCGGugaUCGGCG-CGCGCUc -3'
miRNA:   3'- -CGUCU-----CGUCGGUC---AGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 1923 0.67 0.445143
Target:  5'- ---cGGCAGCCGGgCGGCGUCauGCGUg -3'
miRNA:   3'- cgucUCGUCGGUCaGUCGUAG--CGCGg -5'
28170 5' -56.8 NC_005887.1 + 3419 0.74 0.178937
Target:  5'- gGCAGGGCGGCUuuGUCAcGCAgaugggCGCGaCCu -3'
miRNA:   3'- -CGUCUCGUCGGu-CAGU-CGUa-----GCGC-GG- -5'
28170 5' -56.8 NC_005887.1 + 5508 0.69 0.387878
Target:  5'- gGCAgGAGU-GCCAGcgGGCgcgugGUCGCGCCg -3'
miRNA:   3'- -CGU-CUCGuCGGUCagUCG-----UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 5615 0.66 0.56088
Target:  5'- aUAGAuuGCAGCCAcGUgGGCGcagaaUCGUGCg -3'
miRNA:   3'- cGUCU--CGUCGGU-CAgUCGU-----AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 6392 0.68 0.406427
Target:  5'- gGCAGAacGCcGCCGuaCAGC-UUGCGCCa -3'
miRNA:   3'- -CGUCU--CGuCGGUcaGUCGuAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 7218 0.68 0.425522
Target:  5'- cGCAG-GC-GCU-GUCGGCGUCGgGCg -3'
miRNA:   3'- -CGUCuCGuCGGuCAGUCGUAGCgCGg -5'
28170 5' -56.8 NC_005887.1 + 7341 0.67 0.496289
Target:  5'- aGCGG-GCGGCCGG--GGCcgaugucgcgGUCGCuGCCg -3'
miRNA:   3'- -CGUCuCGUCGGUCagUCG----------UAGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 7575 0.71 0.281492
Target:  5'- gGCAGGcGUAuCCGGaCGGCAUCGCGUa -3'
miRNA:   3'- -CGUCU-CGUcGGUCaGUCGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 9032 0.67 0.469339
Target:  5'- cGUAGGGUAGCCgccgugaaacaGGUaCAucgugucggcgcucuGCGUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGG-----------UCA-GU---------------CGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 9237 0.66 0.56088
Target:  5'- aGCGaacuGC-GCCGcGUCGGCgAUCGCGUCu -3'
miRNA:   3'- -CGUcu--CGuCGGU-CAGUCG-UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 9522 0.73 0.210701
Target:  5'- uGCAcGGCGGCCAucacGUCGGCccgcuguUCGUGCCc -3'
miRNA:   3'- -CGUcUCGUCGGU----CAGUCGu------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 9827 0.78 0.088074
Target:  5'- cGCGucGCAGCCGGUCAGCG-CG-GCCa -3'
miRNA:   3'- -CGUcuCGUCGGUCAGUCGUaGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 9996 0.69 0.386965
Target:  5'- cGCGGAuaCAGCCAGUgccauuucuucgcCGGCAUCgGCGUg -3'
miRNA:   3'- -CGUCUc-GUCGGUCA-------------GUCGUAG-CGCGg -5'
28170 5' -56.8 NC_005887.1 + 10175 0.67 0.485838
Target:  5'- uGCAGccgaucAGCuGGCC-GUCGGCG-CGgGCCg -3'
miRNA:   3'- -CGUC------UCG-UCGGuCAGUCGUaGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 10632 0.66 0.50684
Target:  5'- cGCGGAGC--CUGGgCGGCGUCGUuggGCCa -3'
miRNA:   3'- -CGUCUCGucGGUCaGUCGUAGCG---CGG- -5'
28170 5' -56.8 NC_005887.1 + 10986 0.67 0.445143
Target:  5'- gGCGuGAGCAgGCCGGcCGacGuCAUCuGCGCCg -3'
miRNA:   3'- -CGU-CUCGU-CGGUCaGU--C-GUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 11304 0.75 0.143233
Target:  5'- cGC--AGCGGCCGGcUCGGCAgcgaGCGCCg -3'
miRNA:   3'- -CGucUCGUCGGUC-AGUCGUag--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.