Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28170 | 5' | -56.8 | NC_005887.1 | + | 31647 | 1.14 | 0.000192 |
Target: 5'- gGCAGAGCAGCCAGUCAGCAUCGCGCCa -3' miRNA: 3'- -CGUCUCGUCGGUCAGUCGUAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 14527 | 0.8 | 0.067723 |
Target: 5'- uGCAGGcGCGGCC-GUCGGCggCGCGUCg -3' miRNA: 3'- -CGUCU-CGUCGGuCAGUCGuaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 9827 | 0.78 | 0.088074 |
Target: 5'- cGCGucGCAGCCGGUCAGCG-CG-GCCa -3' miRNA: 3'- -CGUcuCGUCGGUCAGUCGUaGCgCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 27685 | 0.78 | 0.090403 |
Target: 5'- uGCGGGGCAGCgucgaaccggcgaCGGgCAGCAcCGCGCCg -3' miRNA: 3'- -CGUCUCGUCG-------------GUCaGUCGUaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 11304 | 0.75 | 0.143233 |
Target: 5'- cGC--AGCGGCCGGcUCGGCAgcgaGCGCCg -3' miRNA: 3'- -CGucUCGUCGGUC-AGUCGUag--CGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 31050 | 0.75 | 0.147311 |
Target: 5'- uGCAGAaCAGCUGGaUCAGCugCGCGCCu -3' miRNA: 3'- -CGUCUcGUCGGUC-AGUCGuaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 24991 | 0.74 | 0.174075 |
Target: 5'- uCGGGGUAguuGCCGagcGUCAGC-UCGCGCCg -3' miRNA: 3'- cGUCUCGU---CGGU---CAGUCGuAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 1688 | 0.74 | 0.178937 |
Target: 5'- uGCAGGaugguGCGGCCGGugaUCGGCG-CGCGCUc -3' miRNA: 3'- -CGUCU-----CGUCGGUC---AGUCGUaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 3419 | 0.74 | 0.178937 |
Target: 5'- gGCAGGGCGGCUuuGUCAcGCAgaugggCGCGaCCu -3' miRNA: 3'- -CGUCUCGUCGGu-CAGU-CGUa-----GCGC-GG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 32733 | 0.73 | 0.199606 |
Target: 5'- gGCGGGGUAGCgCGGcgCucGCGUgCGCGCCg -3' miRNA: 3'- -CGUCUCGUCG-GUCa-Gu-CGUA-GCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 31857 | 0.73 | 0.199606 |
Target: 5'- uGCAcGAucgauGCGGaCCAGUCgAGCGugaUCGCGCCg -3' miRNA: 3'- -CGU-CU-----CGUC-GGUCAG-UCGU---AGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 27586 | 0.73 | 0.199606 |
Target: 5'- aGCGcGAGCGcGCC-GUCgAGCGUCGUGUCg -3' miRNA: 3'- -CGU-CUCGU-CGGuCAG-UCGUAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 20818 | 0.73 | 0.201783 |
Target: 5'- uGCAGcgucgugaauuucccGGCAGCCGG-CGuCGUUGCGCCg -3' miRNA: 3'- -CGUC---------------UCGUCGGUCaGUcGUAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 14704 | 0.73 | 0.205088 |
Target: 5'- cGCGGcgGGCgGGCCGGgcgCGGCgAUCGCGCa -3' miRNA: 3'- -CGUC--UCG-UCGGUCa--GUCG-UAGCGCGg -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 9522 | 0.73 | 0.210701 |
Target: 5'- uGCAcGGCGGCCAucacGUCGGCccgcuguUCGUGCCc -3' miRNA: 3'- -CGUcUCGUCGGU----CAGUCGu------AGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 31119 | 0.72 | 0.228335 |
Target: 5'- cGCAGAGCAgggcgagcuuGCCGGgcaGGCcgUGCGCa -3' miRNA: 3'- -CGUCUCGU----------CGGUCag-UCGuaGCGCGg -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 32768 | 0.72 | 0.240139 |
Target: 5'- cGCGccauGCAGCCGGcucgugcgcaggaUCGGCG-CGCGCCg -3' miRNA: 3'- -CGUcu--CGUCGGUC-------------AGUCGUaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 29433 | 0.72 | 0.253772 |
Target: 5'- gGCcGAGUAGUC-GUCGGCGUCagGCGCUu -3' miRNA: 3'- -CGuCUCGUCGGuCAGUCGUAG--CGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 15648 | 0.71 | 0.260485 |
Target: 5'- uCAGGGC-GCCGuGUC-GCAgaugCGCGCCg -3' miRNA: 3'- cGUCUCGuCGGU-CAGuCGUa---GCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 28300 | 0.71 | 0.26527 |
Target: 5'- cGCAGcgucguGGCgacuuguugcuggaAGCCuguuGUCGGCGUCuGCGCCg -3' miRNA: 3'- -CGUC------UCG--------------UCGGu---CAGUCGUAG-CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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