miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 32420 0.71 0.267342
Target:  5'- cGCAGcuuGCGGCCGGccuUCuGCAcgaacaugaUCGUGCCg -3'
miRNA:   3'- -CGUCu--CGUCGGUC---AGuCGU---------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 39268 0.71 0.274344
Target:  5'- ----uGCGGCCguGGUCGGCGUUcaGCGCCu -3'
miRNA:   3'- cgucuCGUCGG--UCAGUCGUAG--CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 7575 0.71 0.281492
Target:  5'- gGCAGGcGUAuCCGGaCGGCAUCGCGUa -3'
miRNA:   3'- -CGUCU-CGUcGGUCaGUCGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 19349 0.71 0.288787
Target:  5'- cGCAGaAGCGaCCGGcgucgaUCAGCGgcaaCGCGCCa -3'
miRNA:   3'- -CGUC-UCGUcGGUC------AGUCGUa---GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 40869 0.71 0.288787
Target:  5'- cGCGcGAGC-GCCGcacgccGUCGGCGUCGgGCUc -3'
miRNA:   3'- -CGU-CUCGuCGGU------CAGUCGUAGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 34693 0.7 0.29623
Target:  5'- aGCAGcAGCGGgCGGcCGuCGUCGCGCUu -3'
miRNA:   3'- -CGUC-UCGUCgGUCaGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 18805 0.7 0.29623
Target:  5'- uGCGG-GCGGC--GUCAGCGUaCGCuGCCa -3'
miRNA:   3'- -CGUCuCGUCGguCAGUCGUA-GCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 23401 0.7 0.303821
Target:  5'- cGCuG-GCAGCCuG-CAGCAgCGCGUCg -3'
miRNA:   3'- -CGuCuCGUCGGuCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 16483 0.7 0.317067
Target:  5'- gGCAGgauccGGCGGgCUGGUCGGCGaugucgcaggccgaUCGCGUCg -3'
miRNA:   3'- -CGUC-----UCGUC-GGUCAGUCGU--------------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 42150 0.7 0.318653
Target:  5'- cGCAGAGCAGCgGGgcgaaCuGCGauuuauugcgaauUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGgUCa----GuCGU-------------AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 24193 0.7 0.319449
Target:  5'- uGCcGAGCAGCUucggcacgacGUCGGCGgccCGCGCUu -3'
miRNA:   3'- -CGuCUCGUCGGu---------CAGUCGUa--GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29701 0.7 0.327486
Target:  5'- uGCAcGcGCAGCCAcUCGcCGUCGCGUCg -3'
miRNA:   3'- -CGU-CuCGUCGGUcAGUcGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 39855 0.7 0.338989
Target:  5'- uGCAcGAGCAgGCCGGgcucgccgucgaugaUCcGCGUCaGCGCCu -3'
miRNA:   3'- -CGU-CUCGU-CGGUC---------------AGuCGUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37281 0.69 0.344007
Target:  5'- --cGGG-AGUCGGUgCAGuCGUCGCGCCa -3'
miRNA:   3'- cguCUCgUCGGUCA-GUC-GUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 33790 0.69 0.352489
Target:  5'- uGCGGuGCuGCCu-UCGGCAU-GCGCCc -3'
miRNA:   3'- -CGUCuCGuCGGucAGUCGUAgCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 41359 0.69 0.36901
Target:  5'- cGCAcGGCGGCCGgcaauuugcgcguGUCGGCGaucaccUCGUGCUg -3'
miRNA:   3'- -CGUcUCGUCGGU-------------CAGUCGU------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 12117 0.69 0.378814
Target:  5'- cGCAGaAGC-GCCAGgacgAGCAggccgccgucgCGCGCCa -3'
miRNA:   3'- -CGUC-UCGuCGGUCag--UCGUa----------GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29780 0.69 0.378815
Target:  5'- gGCGGAcaccaugcGCAuGCCGG-CGGcCGUCGaCGCCa -3'
miRNA:   3'- -CGUCU--------CGU-CGGUCaGUC-GUAGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 41683 0.69 0.378815
Target:  5'- aGCAGcAGCAcCUGGUCGGCGgucaugCGCGUg -3'
miRNA:   3'- -CGUC-UCGUcGGUCAGUCGUa-----GCGCGg -5'
28170 5' -56.8 NC_005887.1 + 9996 0.69 0.386965
Target:  5'- cGCGGAuaCAGCCAGUgccauuucuucgcCGGCAUCgGCGUg -3'
miRNA:   3'- -CGUCUc-GUCGGUCA-------------GUCGUAG-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.