miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 24913 0.67 0.496289
Target:  5'- cGC--AGCAGCCGGaUCGGCAccguugucgaUCGCGaCg -3'
miRNA:   3'- -CGucUCGUCGGUC-AGUCGU----------AGCGCgG- -5'
28170 5' -56.8 NC_005887.1 + 1647 0.67 0.496289
Target:  5'- gGCAcGAGCgucgaAGCCgaaauGGUCuuCAUCGCGCUc -3'
miRNA:   3'- -CGU-CUCG-----UCGG-----UCAGucGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 18717 0.67 0.496289
Target:  5'- cGCGcAGCGGCUGGaaCAGCGUCGacagcagcgggcCGCCg -3'
miRNA:   3'- -CGUcUCGUCGGUCa-GUCGUAGC------------GCGG- -5'
28170 5' -56.8 NC_005887.1 + 7341 0.67 0.496289
Target:  5'- aGCGG-GCGGCCGG--GGCcgaugucgcgGUCGCuGCCg -3'
miRNA:   3'- -CGUCuCGUCGGUCagUCG----------UAGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 10175 0.67 0.485838
Target:  5'- uGCAGccgaucAGCuGGCC-GUCGGCG-CGgGCCg -3'
miRNA:   3'- -CGUC------UCG-UCGGuCAGUCGUaGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 37488 0.67 0.485838
Target:  5'- uCAGGGCGG-CGGUCAGUuccuugAUCGcCGCa -3'
miRNA:   3'- cGUCUCGUCgGUCAGUCG------UAGC-GCGg -5'
28170 5' -56.8 NC_005887.1 + 34000 0.67 0.475494
Target:  5'- cGCcGAGC-GCC-GUCGGCAggUCGaCGUCg -3'
miRNA:   3'- -CGuCUCGuCGGuCAGUCGU--AGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 34442 0.67 0.471386
Target:  5'- cCGGAGCGGUCgccucgaAGUCgucuucguucgcgcGGC-UCGCGCCc -3'
miRNA:   3'- cGUCUCGUCGG-------UCAG--------------UCGuAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 9032 0.67 0.469339
Target:  5'- cGUAGGGUAGCCgccgugaaacaGGUaCAucgugucggcgcucuGCGUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGG-----------UCA-GU---------------CGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 41998 0.67 0.46526
Target:  5'- cGCcGGGCAGCuCAGcugcgagccgcUCAGCA-CGUGCg -3'
miRNA:   3'- -CGuCUCGUCG-GUC-----------AGUCGUaGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 40534 0.67 0.465259
Target:  5'- cGCGcGGCAGCgacgaCGGUCuGGCGcUCGCGCa -3'
miRNA:   3'- -CGUcUCGUCG-----GUCAG-UCGU-AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 17183 0.67 0.455141
Target:  5'- cGCGcGAacGCGGCCGcacgCGGCAaugUUGCGCCg -3'
miRNA:   3'- -CGU-CU--CGUCGGUca--GUCGU---AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37998 0.67 0.455141
Target:  5'- aGCAGAGCgcaucgucuugGGCCAG-UAGC-UUGCuacGCCa -3'
miRNA:   3'- -CGUCUCG-----------UCGGUCaGUCGuAGCG---CGG- -5'
28170 5' -56.8 NC_005887.1 + 13028 0.67 0.455141
Target:  5'- aGCAgcucGAGCAGauccacaCGGcCAGCGUCGcCGCg -3'
miRNA:   3'- -CGU----CUCGUCg------GUCaGUCGUAGC-GCGg -5'
28170 5' -56.8 NC_005887.1 + 40608 0.67 0.454136
Target:  5'- uGCGcGAGC-GCCAgaccgucGUCGcuGCcgCGCGCCg -3'
miRNA:   3'- -CGU-CUCGuCGGU-------CAGU--CGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 30528 0.67 0.445143
Target:  5'- cGUAG-GCGGCC-GUCGGCcgaGaCGCCa -3'
miRNA:   3'- -CGUCuCGUCGGuCAGUCGuagC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 1923 0.67 0.445143
Target:  5'- ---cGGCAGCCGGgCGGCGUCauGCGUg -3'
miRNA:   3'- cgucUCGUCGGUCaGUCGUAG--CGCGg -5'
28170 5' -56.8 NC_005887.1 + 10986 0.67 0.445143
Target:  5'- gGCGuGAGCAgGCCGGcCGacGuCAUCuGCGCCg -3'
miRNA:   3'- -CGU-CUCGU-CGGUCaGU--C-GUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 14910 0.68 0.439203
Target:  5'- uGCGGuguGCAcGCCcGcgaacgugcccgccaUCAGCGUCGCgGCCg -3'
miRNA:   3'- -CGUCu--CGU-CGGuC---------------AGUCGUAGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 30708 0.68 0.435269
Target:  5'- aGCAGGuGC-GCgAG-CAGCuuGUCGCGCUg -3'
miRNA:   3'- -CGUCU-CGuCGgUCaGUCG--UAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.