miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 30708 0.68 0.435269
Target:  5'- aGCAGGuGC-GCgAG-CAGCuuGUCGCGCUg -3'
miRNA:   3'- -CGUCU-CGuCGgUCaGUCG--UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 13302 0.68 0.435269
Target:  5'- cCAGAuCGGCCAGgcguUCGGCAaCGCcgGCCg -3'
miRNA:   3'- cGUCUcGUCGGUC----AGUCGUaGCG--CGG- -5'
28170 5' -56.8 NC_005887.1 + 16538 0.68 0.435269
Target:  5'- cGCcGAGUGGgCGcGUCAGCAacUCGUGCa -3'
miRNA:   3'- -CGuCUCGUCgGU-CAGUCGU--AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 32290 0.68 0.435269
Target:  5'- aCGGGGCGaucGUCGGgcCAGCcggCGCGCCg -3'
miRNA:   3'- cGUCUCGU---CGGUCa-GUCGua-GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 35991 0.68 0.435269
Target:  5'- cGCcGuGUGGCCGGaCGGC--CGCGCCg -3'
miRNA:   3'- -CGuCuCGUCGGUCaGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 29745 0.68 0.425523
Target:  5'- uGCAGcugccaAGCAagcGCCAGcUguGCuaccUCGCGCCg -3'
miRNA:   3'- -CGUC------UCGU---CGGUC-AguCGu---AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 7218 0.68 0.425522
Target:  5'- cGCAG-GC-GCU-GUCGGCGUCGgGCg -3'
miRNA:   3'- -CGUCuCGuCGGuCAGUCGUAGCgCGg -5'
28170 5' -56.8 NC_005887.1 + 11388 0.68 0.425522
Target:  5'- cGCAGccggagcgcuGGCGGCCGGcgccgccaaGGCAUCgucugaGCGCCa -3'
miRNA:   3'- -CGUC----------UCGUCGGUCag-------UCGUAG------CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 19816 0.68 0.415908
Target:  5'- gGCAG-GUAGagcGaCAGCGUCGUGCCg -3'
miRNA:   3'- -CGUCuCGUCgguCaGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 18496 0.68 0.415908
Target:  5'- -gAGAucGC-GCCGaUCAGCGUCGUGCUg -3'
miRNA:   3'- cgUCU--CGuCGGUcAGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 6392 0.68 0.406427
Target:  5'- gGCAGAacGCcGCCGuaCAGC-UUGCGCCa -3'
miRNA:   3'- -CGUCU--CGuCGGUcaGUCGuAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 37327 0.68 0.406426
Target:  5'- cGCAGcAGC-GCCGGcacUGGCAUCGguCGCCg -3'
miRNA:   3'- -CGUC-UCGuCGGUCa--GUCGUAGC--GCGG- -5'
28170 5' -56.8 NC_005887.1 + 22863 0.68 0.397083
Target:  5'- cGUAGcucgugaacaacAGCGGCCGcGcCGGCGUCGaGCCa -3'
miRNA:   3'- -CGUC------------UCGUCGGU-CaGUCGUAGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 37095 0.68 0.397082
Target:  5'- aGCGG-GCgAGCaCAGccUCGGCgAUCGCGCg -3'
miRNA:   3'- -CGUCuCG-UCG-GUC--AGUCG-UAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 12183 0.68 0.397082
Target:  5'- uGCAGAacauGCAGaCCgcgaaGGaCAGCGcCGCGCCg -3'
miRNA:   3'- -CGUCU----CGUC-GG-----UCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 32710 0.69 0.387878
Target:  5'- cGguGAGCuGCacaCGGUCGaucaCAUCGUGCCg -3'
miRNA:   3'- -CguCUCGuCG---GUCAGUc---GUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 5508 0.69 0.387878
Target:  5'- gGCAgGAGU-GCCAGcgGGCgcgugGUCGCGCCg -3'
miRNA:   3'- -CGU-CUCGuCGGUCagUCG-----UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 9996 0.69 0.386965
Target:  5'- cGCGGAuaCAGCCAGUgccauuucuucgcCGGCAUCgGCGUg -3'
miRNA:   3'- -CGUCUc-GUCGGUCA-------------GUCGUAG-CGCGg -5'
28170 5' -56.8 NC_005887.1 + 29780 0.69 0.378815
Target:  5'- gGCGGAcaccaugcGCAuGCCGG-CGGcCGUCGaCGCCa -3'
miRNA:   3'- -CGUCU--------CGU-CGGUCaGUC-GUAGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 41683 0.69 0.378815
Target:  5'- aGCAGcAGCAcCUGGUCGGCGgucaugCGCGUg -3'
miRNA:   3'- -CGUC-UCGUcGGUCAGUCGUa-----GCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.