miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 5615 0.66 0.56088
Target:  5'- aUAGAuuGCAGCCAcGUgGGCGcagaaUCGUGCg -3'
miRNA:   3'- cGUCU--CGUCGGU-CAgUCGU-----AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 35991 0.68 0.435269
Target:  5'- cGCcGuGUGGCCGGaCGGC--CGCGCCg -3'
miRNA:   3'- -CGuCuCGUCGGUCaGUCGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 19816 0.68 0.415908
Target:  5'- gGCAG-GUAGagcGaCAGCGUCGUGCCg -3'
miRNA:   3'- -CGUCuCGUCgguCaGUCGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27685 0.78 0.090403
Target:  5'- uGCGGGGCAGCgucgaaccggcgaCGGgCAGCAcCGCGCCg -3'
miRNA:   3'- -CGUCUCGUCG-------------GUCaGUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27356 0.66 0.539034
Target:  5'- -gGGAGCA-CCuGUcCGGCAuggaagUCGUGCCg -3'
miRNA:   3'- cgUCUCGUcGGuCA-GUCGU------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 39915 0.66 0.514283
Target:  5'- cGguGAGCGGUCgauugaugugcgacGG-CGGCccGUCGCGCUu -3'
miRNA:   3'- -CguCUCGUCGG--------------UCaGUCG--UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 7341 0.67 0.496289
Target:  5'- aGCGG-GCGGCCGG--GGCcgaugucgcgGUCGCuGCCg -3'
miRNA:   3'- -CGUCuCGUCGGUCagUCG----------UAGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 18717 0.67 0.496289
Target:  5'- cGCGcAGCGGCUGGaaCAGCGUCGacagcagcgggcCGCCg -3'
miRNA:   3'- -CGUcUCGUCGGUCa-GUCGUAGC------------GCGG- -5'
28170 5' -56.8 NC_005887.1 + 9032 0.67 0.469339
Target:  5'- cGUAGGGUAGCCgccgugaaacaGGUaCAucgugucggcgcucuGCGUCGCGCg -3'
miRNA:   3'- -CGUCUCGUCGG-----------UCA-GU---------------CGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 23440 0.68 0.435269
Target:  5'- aGCGcGAGCAGCaaa--AGCAUCugcgaGCGCCg -3'
miRNA:   3'- -CGU-CUCGUCGgucagUCGUAG-----CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 40608 0.67 0.454136
Target:  5'- uGCGcGAGC-GCCAgaccgucGUCGcuGCcgCGCGCCg -3'
miRNA:   3'- -CGU-CUCGuCGGU-------CAGU--CGuaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 34000 0.67 0.475494
Target:  5'- cGCcGAGC-GCC-GUCGGCAggUCGaCGUCg -3'
miRNA:   3'- -CGuCUCGuCGGuCAGUCGU--AGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 17815 0.66 0.56088
Target:  5'- --cGGGC-GCCA-UCAGCcgCGCgGCCg -3'
miRNA:   3'- cguCUCGuCGGUcAGUCGuaGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 10986 0.67 0.445143
Target:  5'- gGCGuGAGCAgGCCGGcCGacGuCAUCuGCGCCg -3'
miRNA:   3'- -CGU-CUCGU-CGGUCaGU--C-GUAG-CGCGG- -5'
28170 5' -56.8 NC_005887.1 + 41369 0.66 0.549924
Target:  5'- uGCGGuGUuccuuGCCcGgcggCAGCAgCGCGCCc -3'
miRNA:   3'- -CGUCuCGu----CGGuCa---GUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 10175 0.67 0.485838
Target:  5'- uGCAGccgaucAGCuGGCC-GUCGGCG-CGgGCCg -3'
miRNA:   3'- -CGUC------UCG-UCGGuCAGUCGUaGCgCGG- -5'
28170 5' -56.8 NC_005887.1 + 14910 0.68 0.439203
Target:  5'- uGCGGuguGCAcGCCcGcgaacgugcccgccaUCAGCGUCGCgGCCg -3'
miRNA:   3'- -CGUCu--CGU-CGGuC---------------AGUCGUAGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 29745 0.68 0.425523
Target:  5'- uGCAGcugccaAGCAagcGCCAGcUguGCuaccUCGCGCCg -3'
miRNA:   3'- -CGUC------UCGU---CGGUC-AguCGu---AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 36248 0.66 0.539034
Target:  5'- gGCAcGGUgaucCCGGUCGGCAcggugaCGCGCCg -3'
miRNA:   3'- -CGUcUCGuc--GGUCAGUCGUa-----GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15974 0.66 0.50684
Target:  5'- cGCGGAacGCAgGUCGGcCAGCugCGCGUCg -3'
miRNA:   3'- -CGUCU--CGU-CGGUCaGUCGuaGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.