Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28170 | 5' | -56.8 | NC_005887.1 | + | 22863 | 0.68 | 0.397083 |
Target: 5'- cGUAGcucgugaacaacAGCGGCCGcGcCGGCGUCGaGCCa -3' miRNA: 3'- -CGUC------------UCGUCGGU-CaGUCGUAGCgCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 19816 | 0.68 | 0.415908 |
Target: 5'- gGCAG-GUAGagcGaCAGCGUCGUGCCg -3' miRNA: 3'- -CGUCuCGUCgguCaGUCGUAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 34000 | 0.67 | 0.475494 |
Target: 5'- cGCcGAGC-GCC-GUCGGCAggUCGaCGUCg -3' miRNA: 3'- -CGuCUCGuCGGuCAGUCGU--AGC-GCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 36248 | 0.66 | 0.539034 |
Target: 5'- gGCAcGGUgaucCCGGUCGGCAcggugaCGCGCCg -3' miRNA: 3'- -CGUcUCGuc--GGUCAGUCGUa-----GCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 19349 | 0.71 | 0.288787 |
Target: 5'- cGCAGaAGCGaCCGGcgucgaUCAGCGgcaaCGCGCCa -3' miRNA: 3'- -CGUC-UCGUcGGUC------AGUCGUa---GCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 29780 | 0.69 | 0.378815 |
Target: 5'- gGCGGAcaccaugcGCAuGCCGG-CGGcCGUCGaCGCCa -3' miRNA: 3'- -CGUCU--------CGU-CGGUCaGUC-GUAGC-GCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 35991 | 0.68 | 0.435269 |
Target: 5'- cGCcGuGUGGCCGGaCGGC--CGCGCCg -3' miRNA: 3'- -CGuCuCGUCGGUCaGUCGuaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 41369 | 0.66 | 0.549924 |
Target: 5'- uGCGGuGUuccuuGCCcGgcggCAGCAgCGCGCCc -3' miRNA: 3'- -CGUCuCGu----CGGuCa---GUCGUaGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 41683 | 0.69 | 0.378815 |
Target: 5'- aGCAGcAGCAcCUGGUCGGCGgucaugCGCGUg -3' miRNA: 3'- -CGUC-UCGUcGGUCAGUCGUa-----GCGCGg -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 17815 | 0.66 | 0.56088 |
Target: 5'- --cGGGC-GCCA-UCAGCcgCGCgGCCg -3' miRNA: 3'- cguCUCGuCGGUcAGUCGuaGCG-CGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 29745 | 0.68 | 0.425523 |
Target: 5'- uGCAGcugccaAGCAagcGCCAGcUguGCuaccUCGCGCCg -3' miRNA: 3'- -CGUC------UCGU---CGGUC-AguCGu---AGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 32710 | 0.69 | 0.387878 |
Target: 5'- cGguGAGCuGCacaCGGUCGaucaCAUCGUGCCg -3' miRNA: 3'- -CguCUCGuCG---GUCAGUc---GUAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 10986 | 0.67 | 0.445143 |
Target: 5'- gGCGuGAGCAgGCCGGcCGacGuCAUCuGCGCCg -3' miRNA: 3'- -CGU-CUCGU-CGGUCaGU--C-GUAG-CGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 9032 | 0.67 | 0.469339 |
Target: 5'- cGUAGGGUAGCCgccgugaaacaGGUaCAucgugucggcgcucuGCGUCGCGCg -3' miRNA: 3'- -CGUCUCGUCGG-----------UCA-GU---------------CGUAGCGCGg -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 7341 | 0.67 | 0.496289 |
Target: 5'- aGCGG-GCGGCCGG--GGCcgaugucgcgGUCGCuGCCg -3' miRNA: 3'- -CGUCuCGUCGGUCagUCG----------UAGCG-CGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 27356 | 0.66 | 0.539034 |
Target: 5'- -gGGAGCA-CCuGUcCGGCAuggaagUCGUGCCg -3' miRNA: 3'- cgUCUCGUcGGuCA-GUCGU------AGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 20818 | 0.73 | 0.201783 |
Target: 5'- uGCAGcgucgugaauuucccGGCAGCCGG-CGuCGUUGCGCCg -3' miRNA: 3'- -CGUC---------------UCGUCGGUCaGUcGUAGCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 39268 | 0.71 | 0.274344 |
Target: 5'- ----uGCGGCCguGGUCGGCGUUcaGCGCCu -3' miRNA: 3'- cgucuCGUCGG--UCAGUCGUAG--CGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 24193 | 0.7 | 0.319449 |
Target: 5'- uGCcGAGCAGCUucggcacgacGUCGGCGgccCGCGCUu -3' miRNA: 3'- -CGuCUCGUCGGu---------CAGUCGUa--GCGCGG- -5' |
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28170 | 5' | -56.8 | NC_005887.1 | + | 41359 | 0.69 | 0.36901 |
Target: 5'- cGCAcGGCGGCCGgcaauuugcgcguGUCGGCGaucaccUCGUGCUg -3' miRNA: 3'- -CGUcUCGUCGGU-------------CAGUCGU------AGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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