Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28171 | 3' | -56.5 | NC_005887.1 | + | 32688 | 1.07 | 0.000726 |
Target: 5'- uCGGCAACCGCGUACAGCGCACGGAUAg -3' miRNA: 3'- -GCCGUUGGCGCAUGUCGCGUGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 538 | 0.75 | 0.154862 |
Target: 5'- uCGGCcGCCGCGcGCcGCGC-CGGAUAc -3' miRNA: 3'- -GCCGuUGGCGCaUGuCGCGuGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 34702 | 0.74 | 0.182364 |
Target: 5'- gGGCGGCCGuCGUcgcgcuuGCGGUGCGCGGcgAu -3' miRNA: 3'- gCCGUUGGC-GCA-------UGUCGCGUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 26421 | 0.73 | 0.197946 |
Target: 5'- uGGCGGCCGCGcgggaacgcgcgcUGCAGCcGCGCGaGAUc -3' miRNA: 3'- gCCGUUGGCGC-------------AUGUCG-CGUGC-CUAu -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 24216 | 0.73 | 0.217581 |
Target: 5'- uCGGCGGCCcgcgcuucgccgguuGCGUACAGCGCGucCGGu-- -3' miRNA: 3'- -GCCGUUGG---------------CGCAUGUCGCGU--GCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 2206 | 0.72 | 0.265963 |
Target: 5'- gCGGCGAgCGCGgcgcGCAGCGCGCa---- -3' miRNA: 3'- -GCCGUUgGCGCa---UGUCGCGUGccuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 28342 | 0.72 | 0.245895 |
Target: 5'- cCGGCGGuuGCGga-GGCGCGCGGc-- -3' miRNA: 3'- -GCCGUUggCGCaugUCGCGUGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7063 | 0.72 | 0.245895 |
Target: 5'- aCGGCAuuCCG-GUGCAGCGCACcGAc- -3' miRNA: 3'- -GCCGUu-GGCgCAUGUCGCGUGcCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 9253 | 0.72 | 0.233225 |
Target: 5'- uCGGCGAUCGCGUcuauCuGUGCACGGcgGu -3' miRNA: 3'- -GCCGUUGGCGCAu---GuCGCGUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 11546 | 0.71 | 0.302322 |
Target: 5'- -aGCAGCUcgGCGcGCAGCGCGCGGcgGu -3' miRNA: 3'- gcCGUUGG--CGCaUGUCGCGUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 30329 | 0.71 | 0.27294 |
Target: 5'- aCGGUugcgAGCgGCGUGCGuGCGC-CGGAUGu -3' miRNA: 3'- -GCCG----UUGgCGCAUGU-CGCGuGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7020 | 0.71 | 0.287336 |
Target: 5'- uGGcCGGCCGCc-GCGGCGCGCGGc-- -3' miRNA: 3'- gCC-GUUGGCGcaUGUCGCGUGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 15257 | 0.71 | 0.27294 |
Target: 5'- aGGCAGCCGCaGUGCuGCGCGgCGa--- -3' miRNA: 3'- gCCGUUGGCG-CAUGuCGCGU-GCcuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 32472 | 0.7 | 0.31711 |
Target: 5'- cCGGCuggauccuuuucgAACCGUacgauGUGCGGCGCGCGGc-- -3' miRNA: 3'- -GCCG-------------UUGGCG-----CAUGUCGCGUGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 15564 | 0.7 | 0.353419 |
Target: 5'- gCGcGCGACCGCGcucgauucgcugaUcgccgaagcugagacGCAGCGCACGGGc- -3' miRNA: 3'- -GC-CGUUGGCGC-------------A---------------UGUCGCGUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 29365 | 0.7 | 0.350852 |
Target: 5'- cCGGCAGCCGCGaGCGGCauGCccuCGGc-- -3' miRNA: 3'- -GCCGUUGGCGCaUGUCG--CGu--GCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 26213 | 0.7 | 0.342392 |
Target: 5'- gCGGUGGCCgGCcUGCagcuGGCGCACGGGUc -3' miRNA: 3'- -GCCGUUGG-CGcAUG----UCGCGUGCCUAu -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 4183 | 0.7 | 0.325917 |
Target: 5'- gCGGCGacaugACCGCGaccgaagugcUGCAGCGCGCgcaGGAg- -3' miRNA: 3'- -GCCGU-----UGGCGC----------AUGUCGCGUG---CCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 18360 | 0.7 | 0.317903 |
Target: 5'- gGGCGAcuuCCGCGUagACGGCGCGcCGGc-- -3' miRNA: 3'- gCCGUU---GGCGCA--UGUCGCGU-GCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 13772 | 0.7 | 0.342392 |
Target: 5'- uCGuCGACCGCGUccgcGCAGCGgGCGGcgAc -3' miRNA: 3'- -GCcGUUGGCGCA----UGUCGCgUGCCuaU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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