Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28171 | 3' | -56.5 | NC_005887.1 | + | 538 | 0.75 | 0.154862 |
Target: 5'- uCGGCcGCCGCGcGCcGCGC-CGGAUAc -3' miRNA: 3'- -GCCGuUGGCGCaUGuCGCGuGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 1480 | 0.67 | 0.473618 |
Target: 5'- aCGcCGACgGCGUGCGGCGCucgcGCGGc-- -3' miRNA: 3'- -GCcGUUGgCGCAUGUCGCG----UGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 2206 | 0.72 | 0.265963 |
Target: 5'- gCGGCGAgCGCGgcgcGCAGCGCGCa---- -3' miRNA: 3'- -GCCGUUgGCGCa---UGUCGCGUGccuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 2668 | 0.66 | 0.563337 |
Target: 5'- gGGCgagcacaagcaccugGugCGCGUGaAGCGUACGGGc- -3' miRNA: 3'- gCCG---------------UugGCGCAUgUCGCGUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 4183 | 0.7 | 0.325917 |
Target: 5'- gCGGCGacaugACCGCGaccgaagugcUGCAGCGCGCgcaGGAg- -3' miRNA: 3'- -GCCGU-----UGGCGC----------AUGUCGCGUG---CCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 4473 | 0.67 | 0.48395 |
Target: 5'- cCGGCuGCCGCGaaggugccgaACGGCGCGCGc--- -3' miRNA: 3'- -GCCGuUGGCGCa---------UGUCGCGUGCcuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7020 | 0.71 | 0.287336 |
Target: 5'- uGGcCGGCCGCc-GCGGCGCGCGGc-- -3' miRNA: 3'- gCC-GUUGGCGcaUGUCGCGUGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7063 | 0.72 | 0.245895 |
Target: 5'- aCGGCAuuCCG-GUGCAGCGCACcGAc- -3' miRNA: 3'- -GCCGUu-GGCgCAUGUCGCGUGcCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7430 | 0.66 | 0.558939 |
Target: 5'- aCGGCAAguuCCGC-UACAGCGCgACGu--- -3' miRNA: 3'- -GCCGUU---GGCGcAUGUCGCG-UGCcuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7590 | 0.69 | 0.359459 |
Target: 5'- aCGGCA-UCGCGUaaGCGGCGC-CGGu-- -3' miRNA: 3'- -GCCGUuGGCGCA--UGUCGCGuGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 8835 | 0.66 | 0.537101 |
Target: 5'- aCGGUGAUCGCcgACAagauCGCGCGGAUGc -3' miRNA: 3'- -GCCGUUGGCGcaUGUc---GCGUGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 9131 | 0.67 | 0.515567 |
Target: 5'- aCGGCGcgACCGagugccaGUGCGGCGCguucaucuggACGGGc- -3' miRNA: 3'- -GCCGU--UGGCg------CAUGUCGCG----------UGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 9253 | 0.72 | 0.233225 |
Target: 5'- uCGGCGAUCGCGUcuauCuGUGCACGGcgGu -3' miRNA: 3'- -GCCGUUGGCGCAu---GuCGCGUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 10566 | 0.68 | 0.453294 |
Target: 5'- cCGGC-GCCGCaaacgggACAGCGCAaGGAa- -3' miRNA: 3'- -GCCGuUGGCGca-----UGUCGCGUgCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 11546 | 0.71 | 0.302322 |
Target: 5'- -aGCAGCUcgGCGcGCAGCGCGCGGcgGu -3' miRNA: 3'- gcCGUUGG--CGCaUGUCGCGUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 13648 | 0.66 | 0.523066 |
Target: 5'- cCGaGCAgcACCGaCGUgcagaacgcgaucaGCGGCGCgACGGGUGg -3' miRNA: 3'- -GC-CGU--UGGC-GCA--------------UGUCGCG-UGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 13772 | 0.7 | 0.342392 |
Target: 5'- uCGuCGACCGCGUccgcGCAGCGgGCGGcgAc -3' miRNA: 3'- -GCcGUUGGCGCA----UGUCGCgUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 14345 | 0.69 | 0.368213 |
Target: 5'- gCGGCGAUCGUGaaGCAGCGUGcCGGGc- -3' miRNA: 3'- -GCCGUUGGCGCa-UGUCGCGU-GCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 14541 | 0.69 | 0.39534 |
Target: 5'- uCGGCGG-CGCGUcgaucgGCAugucGCGCGCGGAa- -3' miRNA: 3'- -GCCGUUgGCGCA------UGU----CGCGUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 15257 | 0.71 | 0.27294 |
Target: 5'- aGGCAGCCGCaGUGCuGCGCGgCGa--- -3' miRNA: 3'- gCCGUUGGCG-CAUGuCGCGU-GCcuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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