miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28171 3' -56.5 NC_005887.1 + 41951 0.66 0.537101
Target:  5'- cCGGCGuGCuCGCGUGguGCGUGCGcGGc- -3'
miRNA:   3'- -GCCGU-UG-GCGCAUguCGCGUGC-CUau -5'
28171 3' -56.5 NC_005887.1 + 41730 0.69 0.359459
Target:  5'- gCGGCGAuCCGauccCGGCGCGCGGGc- -3'
miRNA:   3'- -GCCGUU-GGCgcauGUCGCGUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 41265 0.69 0.39534
Target:  5'- uCGGCAAUgGCGccgucgACcuGCGCACGGGc- -3'
miRNA:   3'- -GCCGUUGgCGCa-----UGu-CGCGUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 38957 0.67 0.515567
Target:  5'- gCGGUAGCgCGCGgcgaACAGCGUGCGc--- -3'
miRNA:   3'- -GCCGUUG-GCGCa---UGUCGCGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 37448 0.69 0.359459
Target:  5'- gCGGCGcuuGCCuGCGcgguuUGCAGUGCGcCGGAUGc -3'
miRNA:   3'- -GCCGU---UGG-CGC-----AUGUCGCGU-GCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 37112 0.66 0.526293
Target:  5'- uCGGCGAUCGCGcgGCcGuCGCcCGGAa- -3'
miRNA:   3'- -GCCGUUGGCGCa-UGuC-GCGuGCCUau -5'
28171 3' -56.5 NC_005887.1 + 34702 0.74 0.182364
Target:  5'- gGGCGGCCGuCGUcgcgcuuGCGGUGCGCGGcgAu -3'
miRNA:   3'- gCCGUUGGC-GCA-------UGUCGCGUGCCuaU- -5'
28171 3' -56.5 NC_005887.1 + 34299 0.68 0.453294
Target:  5'- gCGGCuGACUGCGgGCGGCa-ACGGGUAg -3'
miRNA:   3'- -GCCG-UUGGCGCaUGUCGcgUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 34250 0.66 0.526293
Target:  5'- uCGGCGAgCGCGgcgaGCuGCGCGCGc--- -3'
miRNA:   3'- -GCCGUUgGCGCa---UGuCGCGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 34140 0.69 0.377112
Target:  5'- --aCAGCCcgcGCGUGuCGGUGCGCGGGUAg -3'
miRNA:   3'- gccGUUGG---CGCAU-GUCGCGUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 33953 0.66 0.581018
Target:  5'- uCGGCGAgcacgUCGCGUGCGGCGUcCGu--- -3'
miRNA:   3'- -GCCGUU-----GGCGCAUGUCGCGuGCcuau -5'
28171 3' -56.5 NC_005887.1 + 33471 0.69 0.386155
Target:  5'- -cGCGAgCGCGUACGGCGUcgcgaucucgACGGGc- -3'
miRNA:   3'- gcCGUUgGCGCAUGUCGCG----------UGCCUau -5'
28171 3' -56.5 NC_005887.1 + 32744 0.68 0.433453
Target:  5'- gCGGCGcUCGCGUGCgcgccGGCGCGCGc--- -3'
miRNA:   3'- -GCCGUuGGCGCAUG-----UCGCGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 32688 1.07 0.000726
Target:  5'- uCGGCAACCGCGUACAGCGCACGGAUAg -3'
miRNA:   3'- -GCCGUUGGCGCAUGUCGCGUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 32635 0.69 0.368213
Target:  5'- gCGGCAcgaugugaucgACCGUGUGCAGCuCACcGGUGu -3'
miRNA:   3'- -GCCGU-----------UGGCGCAUGUCGcGUGcCUAU- -5'
28171 3' -56.5 NC_005887.1 + 32472 0.7 0.31711
Target:  5'- cCGGCuggauccuuuucgAACCGUacgauGUGCGGCGCGCGGc-- -3'
miRNA:   3'- -GCCG-------------UUGGCG-----CAUGUCGCGUGCCuau -5'
28171 3' -56.5 NC_005887.1 + 30329 0.71 0.27294
Target:  5'- aCGGUugcgAGCgGCGUGCGuGCGC-CGGAUGu -3'
miRNA:   3'- -GCCG----UUGgCGCAUGU-CGCGuGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 29955 0.67 0.463397
Target:  5'- aCGGUGucgagcGCCGCGaACAccGcCGCGCGGAUGc -3'
miRNA:   3'- -GCCGU------UGGCGCaUGU--C-GCGUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 29879 0.68 0.453294
Target:  5'- gCGGCAgGCCgaGCGUACGGCGUuucuucACGGc-- -3'
miRNA:   3'- -GCCGU-UGG--CGCAUGUCGCG------UGCCuau -5'
28171 3' -56.5 NC_005887.1 + 29595 0.67 0.473618
Target:  5'- aCGGCGGuguucUCGCGuUGCAGCGCgGCGcGAUc -3'
miRNA:   3'- -GCCGUU-----GGCGC-AUGUCGCG-UGC-CUAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.